Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_F12
(340 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 33 0.016
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 29 0.19
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 29 0.26
SPAC1071.09c |||DNAJ domain protein, DNAJC9 family|Schizosacchar... 29 0.26
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 28 0.34
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 28 0.45
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 28 0.45
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 27 0.59
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 27 1.0
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 26 1.4
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 26 1.4
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 26 1.4
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 26 1.4
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox... 26 1.8
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 26 1.8
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 25 2.4
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe... 25 2.4
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 25 3.2
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 25 3.2
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc... 25 3.2
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual 25 4.2
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch... 25 4.2
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 24 5.5
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo... 24 5.5
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 24 5.5
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 24 5.5
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 24 5.5
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy... 24 7.3
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 24 7.3
SPBC19G7.13 |trf1||telomeric DNA binding factor Trf1|Schizosacch... 24 7.3
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 23 9.6
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 23 9.6
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 23 9.6
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 23 9.6
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 32.7 bits (71), Expect = 0.016
Identities = 20/118 (16%), Positives = 56/118 (47%), Gaps = 7/118 (5%)
Frame = +3
Query: 6 RLQSPKKEDRNRRRKKTAI--AEERRLQSPKKEDCNRRRKKTAIAEE-----RRLQPPKK 164
+L+ K+E+R RR + A ++ L++ ++E+ ++R++ + E + L+ K+
Sbjct: 603 QLKLAKEEERQRREAERLAEQAAQKALEAKRQEEARKKREEQRLKREQEKKQQELERQKR 662
Query: 165 EDCNRRRNEDCNLRRKKTATAEERRLQPPKKEDRNHXXXXXXXXXXXQAPKKEDCNRR 338
E+ +++ + L++++ E+ + + + + K+E+ RR
Sbjct: 663 EEKQKQKEREKKLKKQQQEADREKMAREQRLREEEEKRILEERKRREKLDKEEEERRR 720
Score = 31.1 bits (67), Expect = 0.048
Identities = 22/83 (26%), Positives = 41/83 (49%)
Frame = +3
Query: 6 RLQSPKKEDRNRRRKKTAIAEERRLQSPKKEDCNRRRKKTAIAEERRLQPPKKEDCNRRR 185
R + K+++R ++ KK E R + +++ +K + E +R + KE+ RRR
Sbjct: 662 REEKQKQKEREKKLKKQQ-QEADREKMAREQRLREEEEKRILEERKRREKLDKEEEERRR 720
Query: 186 NEDCNLRRKKTATAEERRLQPPK 254
E +K + +ERRL+ K
Sbjct: 721 RE----LLEKESEEKERRLREAK 739
Score = 27.1 bits (57), Expect = 0.78
Identities = 16/81 (19%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +3
Query: 21 KKEDRNRRRKKTAIAEERRLQSPKKEDCNRRRKKTAIAEERRLQPPKK-EDCNRRRNEDC 197
+KE + ++K+ +A+E Q + E + + A+ +R+ + KK E+ +R ++
Sbjct: 593 EKEKKRDKKKQLKLAKEEERQRREAERLAEQAAQKALEAKRQEEARKKREEQRLKREQEK 652
Query: 198 NLRRKKTATAEERRLQPPKKE 260
+ + EE++ Q +++
Sbjct: 653 KQQELERQKREEKQKQKEREK 673
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 29.1 bits (62), Expect = 0.19
Identities = 21/114 (18%), Positives = 45/114 (39%), Gaps = 2/114 (1%)
Frame = +3
Query: 3 TRLQSPKKEDRNRRRKKTAIAEERRLQSPKKEDCNRRRKKTAIAEERRLQP--PKKEDCN 176
T LQ KKE + + K E ++ + T + ++QP P+K++ +
Sbjct: 161 TNLQKEKKESKVKLESK-----EEKISRNLRSSSRSISPVTEQPQSPKIQPVIPEKKEKS 215
Query: 177 RRRNEDCNLRRKKTATAEERRLQPPKKEDRNHXXXXXXXXXXXQAPKKEDCNRR 338
++ LR++ + + + + PK+ QA ++ +RR
Sbjct: 216 EKKESSMTLRKRSVSPSSQNTARSPKRMATEPIEPASSPAASNQAIRRSSRSRR 269
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 28.7 bits (61), Expect = 0.26
Identities = 17/77 (22%), Positives = 37/77 (48%)
Frame = +3
Query: 27 EDRNRRRKKTAIAEERRLQSPKKEDCNRRRKKTAIAEERRLQPPKKEDCNRRRNEDCNLR 206
+ N + +T E + + PK+ ++ K + K E+ +++R+ED N +
Sbjct: 418 QKHNEEKVETPKPEAQPVSKPKESAEEQKPSKEPEVKPTTPSASKVEEPSKKRDED-NHQ 476
Query: 207 RKKTATAEERRLQPPKK 257
+++T T +R P +K
Sbjct: 477 KEETVTQPKREKTPVEK 493
>SPAC1071.09c |||DNAJ domain protein, DNAJC9
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 28.7 bits (61), Expect = 0.26
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +3
Query: 27 EDRNRRRKKTAIAEERRLQSPKKEDCNRRRKKTAIAEERRLQPPKKEDCNRRRNEDCNLR 206
EDR R+ AI + + + + ++RK+ A A ER Q ++ +E+ R
Sbjct: 172 EDRFRQVINNAIKDGKISKYKRFAPNEKKRKRRAKAAEREAQEAEELSMELGLDENLKKR 231
Query: 207 RKKTATAEE 233
RK A+ EE
Sbjct: 232 RKAGASDEE 240
Score = 25.4 bits (53), Expect = 2.4
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Frame = +3
Query: 15 SPKKEDRNRRRK----KTAIAEERRLQSPKKEDCNRRRKKTAIAEERRLQPPKKEDCNRR 182
+P ++ R RR K + AEE ++ E+ +RRK A EE + +R
Sbjct: 195 APNEKKRKRRAKAAEREAQEAEELSMELGLDENLKKRRKAGASDEEALSALIRSRQKSRM 254
Query: 183 RNEDCNLRRK--KTATAEERRLQPPKKE 260
N NL K K++T ++ + KE
Sbjct: 255 YNLISNLESKYSKSSTKPKKSKKSRSKE 282
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 28.3 bits (60), Expect = 0.34
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 4 RGCNRRRKKTAIAEERRLQSPKKEDCNRRRK--KTAIAEERRLQSPK 138
R R +K E +RL+ KE+ ++K K AEE+RLQ +
Sbjct: 708 RAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEKRLQKER 754
Score = 26.6 bits (56), Expect = 1.0
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 42 RRKKTAIAEERRLQSPKKEDCNRRRK--KTAIAEERRLQPPKKEDCNRRRNEDCN 200
R +K E +RL+ KE+ ++K K AEE+RLQ + + + E +
Sbjct: 713 RERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEKRLQKERAKYAKQMSRESAH 767
Score = 26.6 bits (56), Expect = 1.0
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +3
Query: 6 RLQSPKKEDRNRRRK--KTAIAEERRLQSPKKEDCNRRRKKTAIAEERRLQP-PKKEDCN 176
RL+ KE++ ++K K AEE+RLQ + + + +++A A++ P
Sbjct: 724 RLKKLAKEEKRLKKKEEKARKAEEKRLQKERAKYAKQMSRESAHADQAIANTGPVAPPYF 783
Query: 177 RRRNEDCNLRRKKTATAEERR 239
E + ++ EERR
Sbjct: 784 EHETEPSHYEEEEEEEPEERR 804
Score = 23.8 bits (49), Expect = 7.3
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +2
Query: 206 KKEDRNRRRKKTATAEERRPQPSKKEGAGREKTASAEEGRLQ 331
K++ + +R K EE+R + KKE EK AEE RLQ
Sbjct: 716 KEQAKEAKRLKKLAKEEKRLK--KKE----EKARKAEEKRLQ 751
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 27.9 bits (59), Expect = 0.45
Identities = 14/52 (26%), Positives = 32/52 (61%)
Frame = +3
Query: 36 NRRRKKTAIAEERRLQSPKKEDCNRRRKKTAIAEERRLQPPKKEDCNRRRNE 191
+++RK +E+ ++ KKE+ +RRKK A E++ + K++ ++++E
Sbjct: 425 SKKRKSVESSEKDEDEAAKKEE--KRRKKEAKKEKKEKKEKKEKKEKKKKSE 474
Score = 25.8 bits (54), Expect = 1.8
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = +1
Query: 13 NRRRKKTAIAEERRLQSPKKEDCNRRRKKTAIAEERRLQSPKKE 144
+++RK +E+ ++ KKE+ +RRKK A +E++ + KKE
Sbjct: 425 SKKRKSVESSEKDEDEAAKKEE--KRRKKEA-KKEKKEKKEKKE 465
Score = 24.2 bits (50), Expect = 5.5
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 221 NRRRKKTATAEERRPQPSKKEGAGREKTASAEE 319
+++RK ++E+ + +KKE R+K A E+
Sbjct: 425 SKKRKSVESSEKDEDEAAKKEEKRRKKEAKKEK 457
Score = 23.8 bits (49), Expect = 7.3
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = +2
Query: 203 SKKEDRNRRRKKTATAEERRPQPSKKE 283
+KKE++ R+++ +E++ + KKE
Sbjct: 442 AKKEEKRRKKEAKKEKKEKKEKKEKKE 468
Score = 23.4 bits (48), Expect = 9.6
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +3
Query: 12 QSPKKEDRNRRRKKTAIAEERRLQSPKKEDCNRRRK 119
++ KKE+ +RRKK A +E++ + KKE +++K
Sbjct: 440 EAAKKEE--KRRKKEA-KKEKKEKKEKKEKKEKKKK 472
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 27.9 bits (59), Expect = 0.45
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +3
Query: 18 PKKEDRNRRRKKTAIAEERRLQSPKK---EDCNRRRKKTAIAEERRLQPPKKEDCNRRRN 188
PK+ R++K+ I + RL S E + + ++ R + PK+E R+R+
Sbjct: 73 PKENYNARKKKEQGILQMERLNSSYDLLIEPQSHETPGKPLKKKSRSKTPKREIARRQRD 132
Query: 189 ED 194
ED
Sbjct: 133 ED 134
Score = 24.2 bits (50), Expect = 5.5
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Frame = +3
Query: 6 RLQSPKKEDRNRRRKKTAIAEERRLQSPKKEDCNRRRKKTAIAEERRLQPPKKEDCNRRR 185
+L + + ++++ IAEER Q +K+ + + E+ +L +KE+ +R
Sbjct: 270 KLTQAEIRELEKKKELLRIAEER--QRLEKQATEYQMPEDYFTEQGKLDRKRKEEVLYQR 327
Query: 186 NEDCNLRRKKTAT---AEERR 239
+D N + T AE++R
Sbjct: 328 YKDSNEGEQNEVTMGAAEQQR 348
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 27.5 bits (58), Expect = 0.59
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 11/92 (11%)
Frame = +3
Query: 21 KKEDRNRRRKKTAIAEERRLQSPKK--EDCNRRRKKTAIAEER------RL---QPPKKE 167
+K+ + R + E++R+++ ++ +D RRKK + +E+ RL Q K+
Sbjct: 104 EKQRLEQERFNRELLEKKRIEAERQRLKDEEERRKKELMEKEKKEKERIRLIEEQKHKEN 163
Query: 168 DCNRRRNEDCNLRRKKTATAEERRLQPPKKED 263
+ R + E + +RK+ A E+R++ K+D
Sbjct: 164 EQRRLKQEQIDAKRKEEE-AREKRMKETFKDD 194
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 26.6 bits (56), Expect = 1.0
Identities = 15/64 (23%), Positives = 33/64 (51%)
Frame = +3
Query: 21 KKEDRNRRRKKTAIAEERRLQSPKKEDCNRRRKKTAIAEERRLQPPKKEDCNRRRNEDCN 200
KK+ ++++ K + +++R+ S KE+ +++ K E K ++ NR + +
Sbjct: 198 KKKKEHKKKDKESSSKKRKSGSSDKEEKKKKKIKLKDKPESTSSVEKVKEGNRPASIHFH 257
Query: 201 LRRK 212
RRK
Sbjct: 258 TRRK 261
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 1.4
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +3
Query: 66 EERRLQSPKKEDCNRRRKKTAIAEERRLQPPKKEDCNRRRNEDCNLRRKKTATAEERR 239
EE Q ++ + +RKK + +ER+ P + + ++ LR+K + AEER+
Sbjct: 97 EESSSQKSNSKESHAQRKK--LQKERKAMKPFADTSLKAKSLWDKLRQKTSIKAEERK 152
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 26.2 bits (55), Expect = 1.4
Identities = 14/57 (24%), Positives = 24/57 (42%)
Frame = +3
Query: 48 KKTAIAEERRLQSPKKEDCNRRRKKTAIAEERRLQPPKKEDCNRRRNEDCNLRRKKT 218
K + + R + SP K + K + + K+ N RRN+ NL R+ +
Sbjct: 738 KVLVVDQSRMVSSPSKVSIRPKMKSVRLLAREASEARKEIRHNARRNKSGNLLRRSS 794
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 1.4
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 48 KKTAIAEERRLQSPKKEDCNRRRKKTAIAEERRLQPPKKEDCNRRRNEDCNLRR 209
+K AI E R KE +R + +RR+Q + E+ +R+ E RR
Sbjct: 816 QKRAIEERTRAAREAKER-EQREMAEKLERQRRIQQERDEEISRKLAEKAAARR 868
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 26.2 bits (55), Expect = 1.4
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +3
Query: 12 QSPKKEDRNRRRKKTAIAEERRLQSPKKEDCNRRRKKTAIAEERRLQPPKKEDCNRRRNE 191
Q ++E + R ++K A + + L+ +KE R +++ EER + +KE+ R R E
Sbjct: 105 QQREQEKKLREQEKIAAKKMKELEKLEKERI-RLQEQQRRKEERDQKLREKEEAQRLRQE 163
>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
Etp1/ cytochrome oxidase cofactor Cox15,
fusion|Schizosaccharomyces pombe|chr 1|||Manual
Length = 631
Score = 25.8 bits (54), Expect = 1.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 138 LRRLQSSFFGDCSLLSSAIAVFFLRRLQSS 49
L R ++ F DC ++ FF RRL +S
Sbjct: 49 LSRTKNLFLNDCKFNKNSFEKFFARRLSNS 78
Score = 25.4 bits (53), Expect = 2.4
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -3
Query: 155 RLQSSFFGDCSLLSSAIAVFFLRRLQSSFFGDCSLLSSAIAVFFLRRL 12
R+ SF G SS + L R ++ F DC ++ FF RRL
Sbjct: 33 RMSRSFSG-----SSVLNEINLSRTKNLFLNDCKFNKNSFEKFFARRL 75
Score = 24.6 bits (51), Expect = 4.2
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 155 RLQSSFFGDCSLLSSAIAVFFLRRLQSS 72
R ++ F DC ++ FF RRL +S
Sbjct: 51 RTKNLFLNDCKFNKNSFEKFFARRLSNS 78
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 25.8 bits (54), Expect = 1.8
Identities = 12/51 (23%), Positives = 28/51 (54%)
Frame = +3
Query: 108 RRRKKTAIAEERRLQPPKKEDCNRRRNEDCNLRRKKTATAEERRLQPPKKE 260
+ +KK++ A + R KK R++ + NL++++ + ++ P KK+
Sbjct: 178 KEKKKSSDAWKERKDNEKKAMLMRQQRREENLKKRRESKKSKKGKAPKKKK 228
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 25.4 bits (53), Expect = 2.4
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 203 SKKEDRNRRRKKTATAEERRPQPSKKEGAGREKTASAEE 319
S K D + ++ K P+PSKK ++K+ EE
Sbjct: 44 SSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEE 82
Score = 23.8 bits (49), Expect = 7.3
Identities = 11/42 (26%), Positives = 18/42 (42%)
Frame = +2
Query: 203 SKKEDRNRRRKKTATAEERRPQPSKKEGAGREKTASAEEGRL 328
S+ + +++K A E RP K +T + GRL
Sbjct: 229 SESSSEDEKKRKAEPASEERPAKITKPSQDSNETCTVFVGRL 270
>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 25.4 bits (53), Expect = 2.4
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -3
Query: 128 CSLLSSAIAVFFLRRLQSSFFGDCSLLSSAIAVFFLRR 15
CSLLS AI+V + SS LS + +FF R
Sbjct: 177 CSLLSFAISVLGRNKAPSSLPFALGNLSEKVTIFFTLR 214
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 25.0 bits (52), Expect = 3.2
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Frame = +3
Query: 18 PKKEDRNRRRKKTAIAEERR----LQSPKKEDCNRRRKKTAIAEERRLQPPKKEDCNRRR 185
PK ++ ++ +A+ RR L + ++ N K + PKK+ NRR+
Sbjct: 1171 PKDKENKEKKVPSAVHLVRRGEYLLSALREHHQNFGIKSSPAISTNGKTQPKKQTANRRQ 1230
Query: 186 NEDCNLRRKKTATAEERRLQPPKKEDR 266
+ N++ + + R P E R
Sbjct: 1231 SGKPNVKSAQKIESATRTPSPAISESR 1257
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 25.0 bits (52), Expect = 3.2
Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = +3
Query: 15 SPKKEDRNRRRKKTAIAEERRLQSPKKEDCNRRRKKTAIAEERRLQPPKKEDCNRRR--- 185
S ++E+ N R + ++E + ++E + K +AE+ KKE+ ++
Sbjct: 161 SEEEEEENGARIEELNSDEEDAEQAEEEILEKPVPKDEVAEKHSKDKLKKEEKEKKTAVD 220
Query: 186 -NEDCNLRRKKTATAEE 233
++ N +++KT A E
Sbjct: 221 VSDSVNGKKRKTEPAGE 237
>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 413
Score = 25.0 bits (52), Expect = 3.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 131 DCSLLSSAIAVFFLRRLQSSFFGDCSLLSS 42
DC + S + FF+ + Q F D +LL+S
Sbjct: 368 DCFISSESFQSFFILQKQFQLFQDLALLTS 397
Score = 24.6 bits (51), Expect = 4.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 108 DCSLLSSAIAVFFLRRLQSSFFGDCGLLSS 19
DC + S + FF+ + Q F D LL+S
Sbjct: 368 DCFISSESFQSFFILQKQFQLFQDLALLTS 397
>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 24.6 bits (51), Expect = 4.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 120 KTAIAEERRLQPPKKEDCNRRRNED 194
K +IA R + +KE NRRRN++
Sbjct: 201 KKSIAAAREAEQKRKEMENRRRNQE 225
>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 178
Score = 24.6 bits (51), Expect = 4.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 43 EERRLQSPKKEDCNRRRKKTAIAEERRLQS 132
EE+ L KEDC +K + + LQS
Sbjct: 66 EEKELPKDIKEDCKTVEEKEKVVPRKPLQS 95
Score = 23.8 bits (49), Expect = 7.3
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +3
Query: 66 EERRLQSPKKEDCNRRRKKTAIAEERRLQPPK-KEDCNRRRNE 191
EE+ L KEDC +K + + LQ ED +++ E
Sbjct: 66 EEKELPKDIKEDCKTVEEKEKVVPRKPLQSEGINEDDSQKNGE 108
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 24.2 bits (50), Expect = 5.5
Identities = 11/57 (19%), Positives = 27/57 (47%)
Frame = +3
Query: 21 KKEDRNRRRKKTAIAEERRLQSPKKEDCNRRRKKTAIAEERRLQPPKKEDCNRRRNE 191
+K+ + + K A E + + +K+D ++ K E + PKK+ +++ +
Sbjct: 452 EKKKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRKSEESEDGESPKKKKKSKKSKD 508
Score = 23.8 bits (49), Expect = 7.3
Identities = 9/39 (23%), Positives = 22/39 (56%)
Frame = +3
Query: 3 TRLQSPKKEDRNRRRKKTAIAEERRLQSPKKEDCNRRRK 119
++ + +K+D+ ++ K E +SPKK+ +++ K
Sbjct: 469 SKKEKKEKKDKKHKKSKRKSEESEDGESPKKKKKSKKSK 507
>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 407
Score = 24.2 bits (50), Expect = 5.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 14 IAEERRPQSPKKEDCNRRRKKT 79
+A+ RP P D NRRR+K+
Sbjct: 79 LAQYFRPAPPHPNDRNRRRRKS 100
Score = 24.2 bits (50), Expect = 5.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 217 PQPPKKEDCNRRRKKT 264
P PP D NRRR+K+
Sbjct: 85 PAPPHPNDRNRRRRKS 100
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 24.2 bits (50), Expect = 5.5
Identities = 9/34 (26%), Positives = 20/34 (58%)
Frame = +3
Query: 21 KKEDRNRRRKKTAIAEERRLQSPKKEDCNRRRKK 122
KKE ++++ KK ++++R E+ + +KK
Sbjct: 460 KKEKKDKKEKKKEKSKKKRSADDASEEVKKSKKK 493
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 24.2 bits (50), Expect = 5.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 247 RRRKKTATIEERRSWKREDCKRRR 318
RRR++T IE R+ + E+ +RR
Sbjct: 28 RRRRETQQIEIRKQKREENLNKRR 51
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 24.2 bits (50), Expect = 5.5
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = +3
Query: 66 EERRLQSPKKEDCNRRRKKTAIAEERRLQPPKKEDCNRRRN 188
+ER+ ++ KKE ++K+ + PP++ R+R+
Sbjct: 287 KERKKRAEKKEQQKEKKKEKEKERMKAFIPPEESSKKRKRD 327
>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 427
Score = 23.8 bits (49), Expect = 7.3
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 33 RNRRRKKTAIAEERRLQSPKKE-DCNRRRKK 122
R+R R+ A AEE RL K+E + +++KK
Sbjct: 277 RDRERQAFARAEEERLAKEKEEREIVQKKKK 307
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 23.8 bits (49), Expect = 7.3
Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +3
Query: 81 QSPKKEDCNRRRKKTAIAEERRL----QPPKKEDCNRRRNEDCNLRRKKTATAEERR 239
+ P+KE + K + + +E++ + ++E+ NR++ E+ + +K ERR
Sbjct: 33 EKPQKELSDASVKSSYVDQEQQAYENWKKQEQEEINRKKEEELKSKFEKLRQKNERR 89
>SPBC19G7.13 |trf1||telomeric DNA binding factor
Trf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 23.8 bits (49), Expect = 7.3
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +1
Query: 244 NRRRKKTATIEERRSWKRED 303
N K+T + RRSW +E+
Sbjct: 393 NLNNKRTRRVANRRSWTKEE 412
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 23.4 bits (48), Expect = 9.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 260 RPQPSKKEGAGREKTASAEE 319
RP+PSK++ R K A+E
Sbjct: 138 RPEPSKRKRTARPKKPEAKE 157
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 23.4 bits (48), Expect = 9.6
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +1
Query: 247 RRRKKTATIEERRSWKREDCKRRRRK 324
++++K+ +EE S +RE+CK + K
Sbjct: 17 QQKRKSKKMEELLSKQREECKELQSK 42
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 23.4 bits (48), Expect = 9.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 206 KKEDRNRRRKKTATAEERRPQPSK 277
K +D+ RRK+ A EE+ P+ +
Sbjct: 21 KNKDKLERRKERAKEEEKDPEKKR 44
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 23.4 bits (48), Expect = 9.6
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Frame = +3
Query: 84 SPKKEDCNRRRKKTAIAEERRLQPPKKEDCNRRRNEDC------NLRRKKTATAEERRLQ 245
+P K RR T Q + + NRRR DC + + + A+ +R+
Sbjct: 547 NPMKMPLTPRRASTGPRPRPTFQLTEIDSPNRRRASDCITPSISKILKMVSEDAKSQRID 606
Query: 246 PPKKEDRNH 272
ED+ H
Sbjct: 607 ELSVEDQEH 615
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.126 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,120,592
Number of Sequences: 5004
Number of extensions: 19481
Number of successful extensions: 171
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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