Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_F11
         (345 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    76   2e-15
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    27   1.1  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   4.4  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    24   5.8  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 75.8 bits (178), Expect = 2e-15
 Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 4/71 (5%)
 Frame = +2

Query: 14   LYLFAEANLEA----VQEQITRMLLERLIVNRPHPWGLLITFIELIKNPVYKFWSHEFVH 181
            LYLF  ++       ++EQ+T +LLER+I NRPHPWGLLITF EL+KN  Y FW H ++ 
Sbjct: 2004 LYLFKSSSNNPQELLIKEQMTTVLLERIICNRPHPWGLLITFTELLKNEDYNFWKHPYIK 2063

Query: 182  CAPEIEKLVSS 214
               EI +L  S
Sbjct: 2064 RNDEICRLFDS 2074


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -1

Query: 198 SISGAQ*TNSCDQNLYTGFLISSMNVMSRPHGCGLLTMSL---SSNILVI 58
           ++ G +  +S  QN YTG L+ ++N      G  LLT  L   S+NI+ I
Sbjct: 349 AMKGLEIRSSLYQNRYTGSLLHAINKTVTKSGSRLLTRRLCAPSTNIVEI 398


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 128 IELIK-NPVYKFWSHEFVHCAPEIEKLVS 211
           +ELI  NPV +     F+H  P++E+L+S
Sbjct: 728 VELIADNPVIRDTIWGFLHKLPDLERLIS 756


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
            Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 286  TSGVLVITLCEEHLITTTTT 345
            T+G +++ + ++H  TTTTT
Sbjct: 1030 TAGTVLVDIPQQHATTTTTT 1049


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,446,340
Number of Sequences: 5004
Number of extensions: 26418
Number of successful extensions: 66
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)