Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_F11
(345 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0894 - 21365629-21365766,21365849-21365950,21366042-213662... 119 5e-28
03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-13... 97 4e-21
01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755 27 3.9
12_02_0585 + 20824752-20825954,20826141-20826329,20826533-208266... 27 5.2
01_03_0075 - 12218501-12218611,12219028-12219267,12219698-122198... 27 5.2
11_06_0410 - 23223701-23223714,23223863-23225159,23225314-232262... 26 6.9
07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708 26 9.1
05_03_0249 - 10946993-10947073,10947307-10947432,10948497-109485... 26 9.1
04_03_0109 - 11349059-11349222,11349242-11349617 26 9.1
01_06_0490 + 29759801-29759880,29759881-29759980,29760468-297605... 26 9.1
>10_08_0894 - 21365629-21365766,21365849-21365950,21366042-21366284,
21366685-21366813,21366999-21367103,21367196-21367387,
21367486-21367639,21368148-21368209,21368291-21368437,
21368517-21368564,21369091-21369228,21369305-21369451,
21370579-21370665,21370754-21370861,21370941-21371041,
21371870-21371996,21372820-21372936,21373029-21373106,
21373240-21373284,21373637-21373756,21373838-21373964,
21374033-21374253,21374347-21374529,21374772-21374924,
21375051-21375146,21375226-21375331,21375410-21375492,
21375576-21375728,21375819-21376058,21376367-21376414,
21376782-21376928,21377007-21377115,21377200-21377345,
21377715-21377809,21377944-21378049,21378177-21378368,
21378456-21378686,21378772-21378866,21379426-21379529,
21380040-21380284,21380300-21380347,21380376-21380480,
21380630-21380767,21381458-21381649,21381738-21381914,
21382001-21382129,21382203-21382316,21382407-21382746,
21382836-21383064,21383155-21383455,21384311-21384358,
21387963-21388355
Length = 2493
Score = 119 bits (287), Expect = 5e-28
Identities = 54/68 (79%), Positives = 58/68 (85%)
Frame = +2
Query: 11 LLYLFAEANLEAVQEQITRMLLERLIVNRPHPWGLLITFIELIKNPVYKFWSHEFVHCAP 190
+LYLF+EAN E VQEQITR+LLERLIVNRPHPWGLLITFIELIKNP Y FW+ F CAP
Sbjct: 2405 ILYLFSEANQEIVQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYSFWARSFTRCAP 2464
Query: 191 EIEKLVSS 214
EIEKL S
Sbjct: 2465 EIEKLFES 2472
>03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-132773,
132883-132996,133065-133193,133293-133469,133555-133746,
134844-134981,135327-135559,135900-136003,136633-136727,
136817-137053,137801-137922,138252-138354,138750-138826,
138909-139017,139107-139253,139953-140000,140292-140492,
140589-140738,140917-141002,141088-141193,141278-141373,
141759-141911,142647-142819,142923-142986,144056-144193,
144548-144595,144690-144836,144907-144968,146540-146645,
147357-147461,147548-147679,147765-147974,148070-148171,
148261-148398
Length = 1729
Score = 96.7 bits (230), Expect = 4e-21
Identities = 38/66 (57%), Positives = 53/66 (80%)
Frame = +2
Query: 11 LLYLFAEANLEAVQEQITRMLLERLIVNRPHPWGLLITFIELIKNPVYKFWSHEFVHCAP 190
+L+LF+EA E +Q+QI R++LERL+V RPHPWGL +T +ELIKNP YK WS F+ C P
Sbjct: 1641 ILHLFSEATQEIIQDQIMRVILERLVVRRPHPWGLQMTLVELIKNPRYKLWSRPFIRCGP 1700
Query: 191 EIEKLV 208
+I+K++
Sbjct: 1701 QIDKVL 1706
>01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755
Length = 482
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 10 PPVLVRRSELGSCPGTNHQDVARETHCQQTASVGSAH 120
PP +R S G+ + +DVA T C ++ + H
Sbjct: 338 PPTRMRTSSAGAGDSHSSRDVAESTSCAESPPIPQMH 374
>12_02_0585 +
20824752-20825954,20826141-20826329,20826533-20826690,
20826913-20827009,20827368-20827730,20829225-20829303,
20830180-20830286
Length = 731
Score = 26.6 bits (56), Expect = 5.2
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -1
Query: 57 CSWTASKFASANKYRRPSC 1
C+W KF SA KY C
Sbjct: 641 CAWNGGKFGSATKYEWKPC 659
>01_03_0075 -
12218501-12218611,12219028-12219267,12219698-12219815,
12219949-12220016,12220124-12220375,12221362-12221463,
12221734-12221802,12221892-12221987,12222161-12222208,
12222352-12222479,12222818-12222896,12223651-12223797,
12223956-12224022,12224655-12224830,12225588-12225755,
12225879-12225992,12226657-12226722,12227306-12227524,
12228142-12228321,12228481-12228584,12228998-12229277,
12230582-12231004
Length = 1084
Score = 26.6 bits (56), Expect = 5.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 24 SPKRTWKLSRNKSPGCCSRDSLS 92
SPK+TWK + + P S+D+LS
Sbjct: 593 SPKKTWKTNESLFPCELSKDALS 615
>11_06_0410 -
23223701-23223714,23223863-23225159,23225314-23226225,
23226952-23227023,23227323-23227471,23227879-23227912
Length = 825
Score = 26.2 bits (55), Expect = 6.9
Identities = 22/84 (26%), Positives = 34/84 (40%)
Frame = +3
Query: 30 KRTWKLSRNKSPGCCSRDSLSTDRIRGVCSLHSLN*SRTPYTSSGHTSSFIVHQKLKN*C 209
+R W + P CSR L +C + N + T+ SSF+V +K
Sbjct: 558 ERYWLACLAEVP-TCSRVILVWHIATSLCEIKLANDHKINLTTMSRLSSFLVDEKALTGE 616
Query: 210 LLINYYIV**LRTY*LYRIRKRPK 281
L Y + L Y +Y + +PK
Sbjct: 617 LQKAYTVSNCLSWYCMYLLASKPK 640
>07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708
Length = 2033
Score = 25.8 bits (54), Expect = 9.1
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -1
Query: 192 SGAQ*TNSCDQNLYTGFLISSMNVMSRPHGCGLLTMSLSSNILVICSWTASKFA 31
+G TN+ D+ L TGF I+ ++ PHG +S+ + W + A
Sbjct: 353 TGGGATNTTDRML-TGFAIAMQDLRCEPHGGEKPAARVSAVFRAVSPWEDQQLA 405
>05_03_0249 -
10946993-10947073,10947307-10947432,10948497-10948552,
10949066-10949338,10951434-10951716
Length = 272
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 116 LITFIELIKNPVYKFWSHEFVHCAPEI 196
+I +I I+NPV K+ EFV P +
Sbjct: 191 IIFYIYFIRNPVTKWNQKEFVSVGPSV 217
>04_03_0109 - 11349059-11349222,11349242-11349617
Length = 179
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 1 ARGPPVLVRRSELGSCPGTNHQDVAR 78
AR P+ R G PGT H DVA+
Sbjct: 142 ARALPLDTRTWPRGDVPGTGHTDVAK 167
>01_06_0490 +
29759801-29759880,29759881-29759980,29760468-29760574,
29761305-29761554,29761989-29762111,29762471-29762638,
29762741-29762878,29763206-29763235
Length = 331
Score = 25.8 bits (54), Expect = 9.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 158 FWSHEFVHCAPEIEKLVS 211
F+ H F H PEI KL+S
Sbjct: 247 FYDHIFSHLQPEIAKLIS 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,145,944
Number of Sequences: 37544
Number of extensions: 160165
Number of successful extensions: 417
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -