Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_F11
         (345 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.0  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   1.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   1.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   4.1  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    21   4.1  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    21   4.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   5.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   7.2  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    20   9.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   9.5  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 134 LIKNPVYKFWSHEFVHCAPEIEKLVS 211
           L+K+PV +FW    +  +  IE + S
Sbjct: 179 LLKDPVKEFWERRTLQISDGIENIGS 204


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 134 LIKNPVYKFWSHEFVHCAPEIEKLVS 211
           L+K+PV +FW    +  +  IE + S
Sbjct: 232 LLKDPVKEFWERRTLQISDGIENIGS 257


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 209 TLIFQFLVHNERTRVTRTCI 150
           T  F FL  +E T+V  TCI
Sbjct: 205 TCSFDFLTDDEDTKVFVTCI 224


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 209 TLIFQFLVHNERTRVTRTCI 150
           T  F FL  +E T+V  TCI
Sbjct: 205 TCSFDFLTDDEDTKVFVTCI 224


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +1

Query: 52  GTNHQDVARETHCQQTASVGSAHYIH 129
           G N  D+ R + C    +  + HY H
Sbjct: 402 GANVNDLIRNSRCANFDNQDNNHYNH 427


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 50  QEQITRMLLERLIVNRPHPWGLL 118
           Q++I   +++ LI N+P  W LL
Sbjct: 82  QKKIADKVVQFLIDNKPEIWVLL 104


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 50  QEQITRMLLERLIVNRPHPWGLL 118
           Q++I   +++ LI N+P  W LL
Sbjct: 82  QKKIADKVVQFLIDNKPEIWVLL 104


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 120 MSRPHGCGLLTMSLSSNILVI 58
           M   HG G+++  LSS +L++
Sbjct: 3   MDETHGGGMVSAILSSIVLLL 23


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 7/17 (41%), Positives = 8/17 (47%)
 Frame = +2

Query: 140 KNPVYKFWSHEFVHCAP 190
           KNP    W    V C+P
Sbjct: 378 KNPAMGHWQMSCVACSP 394


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 52  GTNHQDVARETHC 90
           G N +++ R THC
Sbjct: 402 GANVKELIRNTHC 414


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 37  LGSCPGTNHQDVARETHCQQTASVGSA 117
           L S P  +    A+ + C QTAS+ S+
Sbjct: 675 LTSPPARSPSSQAQASQCPQTASLLSS 701


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,675
Number of Sequences: 438
Number of extensions: 1809
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)