Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_F10
         (330 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    42   2e-05
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    38   5e-04
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    37   0.001
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch...    31   0.060
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    26   1.7  
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch...    25   3.0  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    25   3.9  
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    25   3.9  
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    24   5.2  
SPAP27G11.09c |||GTP cyclohydrolase |Schizosaccharomyces pombe|c...    24   5.2  
SPBC337.14 |rpb4||DNA-directed RNA polymerase II complex subunit...    24   5.2  
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    24   6.8  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    24   6.8  
SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar...    24   6.8  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    23   9.0  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    23   9.0  
SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces ...    23   9.0  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    23   9.0  

>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 42.3 bits (95), Expect = 2e-05
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = -3

Query: 142 KAFQMFDTTKSGYIDVLKISTILNTMGQLFDDSELQALIDE 20
           KAF++FD   SGYI+  K +  + T+G+   D+E+Q ++ E
Sbjct: 82  KAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQE 122


>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 37.5 bits (83), Expect = 5e-04
 Identities = 17/53 (32%), Positives = 35/53 (66%)
 Frame = -3

Query: 178 DTDDDQKMAMLRKAFQMFDTTKSGYIDVLKISTILNTMGQLFDDSELQALIDE 20
           DTD+++++   R+AF++FD   +GYI V +++ +L ++G+     E+  +I E
Sbjct: 80  DTDNEEEV---REAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIRE 129



 Score = 36.7 bits (81), Expect = 0.001
 Identities = 16/49 (32%), Positives = 31/49 (63%)
 Frame = -3

Query: 166 DQKMAMLRKAFQMFDTTKSGYIDVLKISTILNTMGQLFDDSELQALIDE 20
           D+++A  R+AF +FD  + G I   ++  ++ ++GQ    +ELQ +I+E
Sbjct: 8   DEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINE 56


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 36.7 bits (81), Expect = 0.001
 Identities = 13/43 (30%), Positives = 28/43 (65%)
 Frame = -3

Query: 148 LRKAFQMFDTTKSGYIDVLKISTILNTMGQLFDDSELQALIDE 20
           +++AF++FD  ++G I +  +  +   + +  DD EL+A+I+E
Sbjct: 112 IKRAFELFDDDETGKISLRNLRRVAKELNENIDDQELEAMIEE 154


>SPAC1687.14c |||EF hand family protein, unknown
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 30.7 bits (66), Expect = 0.060
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 142 KAFQMFDTTKSGYIDVLKISTILNTMGQLFDDSELQALID 23
           +AF +FD T  GYID   +      +G+     +LQ ++D
Sbjct: 16  EAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLMLD 55


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 198 NAFLLHRTPMTIKRWRCSAKHSRCSTQRSP 109
           +A ++ RTP T+ R      HS   T+RSP
Sbjct: 311 SASMMSRTPNTLNRPSNYRSHSSMGTRRSP 340


>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
           Rga5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 168 TIKRWRCSAKHSRCSTQRSP 109
           +IKRWR  ++HS  +   SP
Sbjct: 295 SIKRWRSFSRHSSATYSNSP 314


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 94  LKISTILNTMGQLFDDSELQALIDENPRAE 5
           + +ST+ +T  +  DDS L+ + DE P  +
Sbjct: 12  ISVSTVEDTSFEAMDDSILEIIDDEAPEIQ 41


>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 121 TTKSGYIDVLKISTILNTMGQLFDDSE 41
           TTKS +I++   ST +    ++F+DS+
Sbjct: 143 TTKSRFIEISATSTTVADCRKIFEDSQ 169


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 79  LLKSSEHRYIRTSLCRTS 132
           LLK  EH Y+ T+ C+ S
Sbjct: 16  LLKKWEHEYVHTNNCKPS 33


>SPAP27G11.09c |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 326

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 137 IPDVRHNEVRIYRCSEDFNNPEH 69
           IP V+  E+ ++    DF+N EH
Sbjct: 74  IPTVKGTEIFLHLYKNDFDNKEH 96


>SPBC337.14 |rpb4||DNA-directed RNA polymerase II complex subunit
           Rpb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 135

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -3

Query: 151 MLRKAFQMFDTTKSGYI---DVLKISTILNTMGQLFDDSELQALIDE 20
           +L   F  F+  + G +   D  +  T++ ++    DD  LQ ++DE
Sbjct: 80  ILGNRFHKFERAQLGTLCCEDAEEARTLIPSLANKIDDQNLQGILDE 126


>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -3

Query: 154 AMLRKAFQMFDTTKSGYIDVLKISTILN--TMGQLFD 50
           A     F +FD  K+GYID  +    L+  + G+L D
Sbjct: 63  AFAEYVFNVFDADKNGYIDFKEFICALSVTSRGELND 99


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 69  VFRIVEIFRTSIYPDFVVSNI 131
           VF   E+F+TS+Y D  VS I
Sbjct: 406 VFYENEVFKTSLYRDHPVSEI 426


>SPAC343.14c |||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 31  APAVRNHRTVVPWCSGLLKSS 93
           A A R+H T V  CSG+ K S
Sbjct: 297 AQAARHHATPVVVCSGIYKLS 317


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +3

Query: 78  IVEIFRTSIYPDFVVSN 128
           + E+F+++ YP F++SN
Sbjct: 486 LFELFQSASYPGFLISN 502


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = -1

Query: 42  NCRRSSMKILV 10
           NCRRS++KILV
Sbjct: 691 NCRRSAVKILV 701


>SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 201

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 180 RTPMTIKRWRCSAKHSRCSTQRSPDI 103
           R P+   RWRCS     C T   PD+
Sbjct: 58  RPPLEGCRWRCSIALPNC-TLPKPDV 82


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 23  IDERLQFGIIEQLSHG 70
           I E + FGI+  LSHG
Sbjct: 601 IQENIYFGIVAGLSHG 616


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,461,214
Number of Sequences: 5004
Number of extensions: 29272
Number of successful extensions: 89
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)