Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_F10
         (330 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    20   6.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    20   6.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   8.9  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 5/12 (41%), Positives = 8/12 (66%)
 Frame = -1

Query: 207 WLPNAFLLHRTP 172
           W+P   ++ RTP
Sbjct: 357 WMPRLLMMRRTP 368


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 176 HR*RSKDGDAPQSIPDV 126
           H  R+K+GD  + +PD+
Sbjct: 23  HTCRTKNGDYTKIMPDI 39


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 124 DTTKSGYIDVLKISTILNT 68
           D  KSG  D++ +   LNT
Sbjct: 194 DYWKSGTWDIINVPAYLNT 212


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,126
Number of Sequences: 438
Number of extensions: 1967
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)