Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_F09
(422 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0310 - 16669565-16669822,16670558-16670794 158 1e-39
03_01_0290 + 2246791-2247027,2248089-2248346 158 1e-39
02_03_0131 - 15576422-15577021 29 2.0
01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990,142... 29 2.0
08_02_0880 + 22203440-22204324,22204763-22204876,22204964-222054... 28 2.7
03_05_0412 + 23993452-23994068,23996249-23996350,23996799-239969... 28 3.6
01_01_0496 + 3660103-3660315,3660601-3661803,3662950-3663078 28 3.6
07_01_0174 - 1227871-1228043,1228303-1228423,1228519-1228588,122... 27 4.7
02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599 27 4.7
08_01_0293 - 2367453-2368088 27 6.2
06_01_1088 - 8926361-8927301,8927437-8927705,8927850-8929023,892... 27 6.2
06_01_0056 - 478424-478491,478587-478821,478916-478978,479102-47... 27 6.2
10_05_0007 + 7759814-7760063,7760367-7760507,7760580-7761007 27 8.2
09_01_0142 - 2103224-2103864,2104264-2104399 27 8.2
08_01_0987 + 9979651-9979746,9979818-9980058,9980947-9981090,998... 27 8.2
06_03_0846 - 25328224-25330613,25330716-25330794 27 8.2
04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484 27 8.2
01_06_0088 + 26305326-26306372 27 8.2
>10_08_0310 - 16669565-16669822,16670558-16670794
Length = 164
Score = 158 bits (384), Expect = 1e-39
Identities = 71/130 (54%), Positives = 99/130 (76%)
Frame = +1
Query: 31 MTNSNGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 210
M +G R TRDLFAR FR G IPL+TY++ YK+G+ VD++ NGAV KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGR 60
Query: 211 TGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAK 390
TGRV+NVT A+GV +NK+V RI+ KRI++R+EHV+ S+C ++F R +N++L +AK
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAK 120
Query: 391 AAGKVVNLKR 420
A G+V++ KR
Sbjct: 121 ARGEVISTKR 130
>03_01_0290 + 2246791-2247027,2248089-2248346
Length = 164
Score = 158 bits (384), Expect = 1e-39
Identities = 71/130 (54%), Positives = 98/130 (75%)
Frame = +1
Query: 31 MTNSNGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 210
M +G R TRDLFAR FR G IPL+TY++ YK+GD VD++ NGAV KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
Query: 211 TGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAK 390
TGRV+NVT A+GV +NK+V RI+ KRI++R+EHV+ S+C ++ R +N++L +AK
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKADAK 120
Query: 391 AAGKVVNLKR 420
A G+V++ KR
Sbjct: 121 ARGEVISTKR 130
>02_03_0131 - 15576422-15577021
Length = 199
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = +3
Query: 231 DRTRSRRDREQAR-PRQDPTE---THQHPHRAREALQVQAGLPQARQ 359
+R R RDR+++R P D + +H H HR R + AG + R+
Sbjct: 54 ERRRGERDRKRSRSPSADRSHRRHSHSHSHRGRSSPSPDAGRHKRRR 100
>01_01_0167 +
1422344-1424260,1424338-1424472,1424568-1424990,
1425183-1425252,1425356-1425495,1425620-1425679,
1425776-1425931,1426272-1426541
Length = 1056
Score = 28.7 bits (61), Expect = 2.0
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 130 YKVGDIVDIRGNGAVQKGMPHKVY 201
++ GDI+ I G+G+V K PH++Y
Sbjct: 623 FEDGDIIVIWGDGSVSKVGPHEIY 646
>08_02_0880 +
22203440-22204324,22204763-22204876,22204964-22205455,
22205646-22205819,22206589-22206978,22209927-22210022,
22210645-22210760,22210872-22211042,22211126-22211285,
22211388-22211573,22211665-22211793,22211918-22211996,
22212159-22212268
Length = 1033
Score = 28.3 bits (60), Expect = 2.7
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Frame = +3
Query: 180 GYATQSIPR*DRACLQCDRTRSR--------RDREQARPRQDPTETHQHPHR-----ARE 320
G A + P R+ +C T SR R A + PT + P R ARE
Sbjct: 106 GGAAHTPPGSGRSLSRCSSTSSRIRKKFAWLRSPSPAPAPRAPTPSEPPPPREAAMAARE 165
Query: 321 ALQVQAGLPQARQGERKAVEG 383
++QA L ++R G R+A++G
Sbjct: 166 RRRIQARLNRSRSGARRALKG 186
>03_05_0412 +
23993452-23994068,23996249-23996350,23996799-23996994,
23997075-23997259,23997394-23997498,23997625-23997722,
23997832-23998067,23998314-23998382,23999768-23999833,
24000513-24000611,24000688-24000750
Length = 611
Score = 27.9 bits (59), Expect = 3.6
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 206 PWYTLCGIPFCTAPLPLMSTM 144
P T CGI F TA LPL+ M
Sbjct: 430 PNVTTCGIQFATAQLPLLQLM 450
>01_01_0496 + 3660103-3660315,3660601-3661803,3662950-3663078
Length = 514
Score = 27.9 bits (59), Expect = 3.6
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -3
Query: 171 SAIAPNVNDVSHFVHFHVRGKWNSSMCAESSGEQVPGTTTITIGVCHIL 25
+A A +SH++ H R W + A + + GT T G+ H+L
Sbjct: 38 TAAATTPQRISHYLAHHPRATWEALSAAFPAADHDSGTAATTRGL-HLL 85
>07_01_0174 -
1227871-1228043,1228303-1228423,1228519-1228588,
1228877-1228953,1229215-1229393,1229558-1229684,
1229849-1229861,1230351-1230378,1230426-1230516,
1230870-1230956,1231239-1231276,1231426-1231464,
1231553-1231699,1231899-1231958,1232033-1232111,
1232429-1232517,1232906-1232967,1233238-1233427,
1233929-1234068,1235813-1236147,1237086-1237133
Length = 730
Score = 27.5 bits (58), Expect = 4.7
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +1
Query: 181 GMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKC 333
G P G T VY+V AH+ GVIV+ + I ++ ++H C
Sbjct: 137 GQPLLEMIGHTSLVYSVDAHSSGVIVSGSEDRSAKIWKDGICVQSIEHPGC 187
>02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599
Length = 99
Score = 27.5 bits (58), Expect = 4.7
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +1
Query: 316 VKHSKCRQDFLKRVKENERLLKEAKA 393
++ +KCRQD++ VK++ +L+++ A
Sbjct: 1 MRQAKCRQDYMAIVKQSRQLIEKLDA 26
>08_01_0293 - 2367453-2368088
Length = 211
Score = 27.1 bits (57), Expect = 6.2
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 213 RACLQCDRTRSRRDREQARPRQDPTETHQHPHRAREALQVQAGLPQARQG 362
+ CL+ + R+RR + R R+D T AR AL A A++G
Sbjct: 56 KLCLRTLQPRARRGGGEHRRRRDDAVTRYVGAAARGALDAYAATAAAKRG 105
>06_01_1088 -
8926361-8927301,8927437-8927705,8927850-8929023,
8929132-8929399
Length = 883
Score = 27.1 bits (57), Expect = 6.2
Identities = 17/54 (31%), Positives = 21/54 (38%)
Frame = +1
Query: 244 LGVIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAKAAGKV 405
LGV + + R KR + K + CR LK L EAK G V
Sbjct: 151 LGVPLTRGAAARAKEKRAAATVTGTKSASCRTKKLKGESSRAPRLDEAKCIGNV 204
>06_01_0056 -
478424-478491,478587-478821,478916-478978,479102-479179,
479263-479354,479788-479866,479971-480104,480184-480523
Length = 362
Score = 27.1 bits (57), Expect = 6.2
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +1
Query: 85 FRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALG 249
F T G IP Y+ G + + +G + G PHK+ R+Y++ + ALG
Sbjct: 110 FSTEGEIP-------YREGQSIGVIADGVDKNGKPHKL------RLYSIASSALG 151
>10_05_0007 + 7759814-7760063,7760367-7760507,7760580-7761007
Length = 272
Score = 26.6 bits (56), Expect = 8.2
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 211 TGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKH--SKCRQD 342
T R NV +IV VRGRI+P I ++H + +C+++
Sbjct: 138 TNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQGKQCQEN 183
>09_01_0142 - 2103224-2103864,2104264-2104399
Length = 258
Score = 26.6 bits (56), Expect = 8.2
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 211 TGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKH--SKCRQD 342
T R NV +IV VRGRI+P I ++H + +C+++
Sbjct: 124 TNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQGKQCQEN 169
>08_01_0987 +
9979651-9979746,9979818-9980058,9980947-9981090,
9981253-9981313,9981603-9982061,9982472-9982529,
9983579-9983839
Length = 439
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 212 VLPWYTLCGIPFCTAPLPLMSTMSPTL 132
V PW T CG+ F +P P ++ S +L
Sbjct: 408 VQPWVTGCGVVFGPSPRPPCTSASSSL 434
>06_03_0846 - 25328224-25330613,25330716-25330794
Length = 822
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 208 KTGRVYNVTAHALGVIVNKRVRGRILPKRINIRI 309
+TG ++V A+ V+ +R GR++ R+N+RI
Sbjct: 158 RTGE-FDVRANVYAVVAKRRDGGRLVLPRLNLRI 190
>04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484
Length = 543
Score = 26.6 bits (56), Expect = 8.2
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 211 TGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKH--SKCRQD 342
T R NV +IV VRGRI+P I ++H + +C+++
Sbjct: 409 TNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQGKQCQEN 454
>01_06_0088 + 26305326-26306372
Length = 348
Score = 26.6 bits (56), Expect = 8.2
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -1
Query: 245 RACAVTL*TRPVLPWYTLCGIPFCTAPLPLMSTMSPTLYTFMYVESGIVPCVRN 84
RA A T+ P WY LP ++ ++PT F+Y +PC+ N
Sbjct: 6 RAMAWTVLLVPACAWYARSACRRLRPGLPRLAALAPTFPVFVY-----LPCLFN 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,726,033
Number of Sequences: 37544
Number of extensions: 259205
Number of successful extensions: 877
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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