Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_F08
(218 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 95 6e-21
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 95 6e-21
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 95 6e-21
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 93 2e-20
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 87 2e-18
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 87 2e-18
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 87 2e-18
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 87 2e-18
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 84 1e-17
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 84 1e-17
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 83 3e-17
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 78 7e-16
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 78 1e-15
Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical pr... 75 7e-15
Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical pr... 67 1e-12
Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical p... 46 3e-06
Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical pr... 46 3e-06
Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical pr... 45 6e-06
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 44 1e-05
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 44 1e-05
Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical p... 43 3e-05
Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical p... 43 3e-05
Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical pr... 40 2e-04
Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical p... 35 0.009
AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin... 35 0.009
AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin... 32 0.063
AL021387-2|CAA16168.1| 463|Caenorhabditis elegans Hypothetical ... 27 2.4
AF399825-1|AAK77200.1| 1262|Caenorhabditis elegans separase prot... 27 2.4
AF273769-1|AAG15118.1| 463|Caenorhabditis elegans nuclear recep... 27 2.4
AF083222-1|AAD03680.1| 463|Caenorhabditis elegans nuclear recep... 27 2.4
AC024791-1|AAF60651.1| 1262|Caenorhabditis elegans Separase prot... 27 2.4
Z48009-5|CAA88086.1| 329|Caenorhabditis elegans Hypothetical pr... 25 7.3
U39674-6|AAA80416.1| 291|Caenorhabditis elegans Hypothetical pr... 25 7.3
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr... 25 7.3
U13071-1|AAL65794.1| 462|Caenorhabditis elegans Hypothetical pr... 25 7.3
AF003389-10|AAC71135.2| 289|Caenorhabditis elegans Hypothetical... 25 7.3
U80837-6|AAB37906.1| 172|Caenorhabditis elegans Hypothetical pr... 25 9.6
AF273832-1|AAG15180.1| 408|Caenorhabditis elegans nuclear recep... 25 9.6
AF022984-9|AAB69950.2| 393|Caenorhabditis elegans Nuclear hormo... 25 9.6
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 95.1 bits (226), Expect = 6e-21
Identities = 38/44 (86%), Positives = 43/44 (97%)
Frame = +2
Query: 86 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGG 217
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDGQMP+DK++GG
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGG 44
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 95.1 bits (226), Expect = 6e-21
Identities = 38/44 (86%), Positives = 43/44 (97%)
Frame = +2
Query: 86 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGG 217
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDGQMP+DK++GG
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGG 44
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 95.1 bits (226), Expect = 6e-21
Identities = 38/44 (86%), Positives = 43/44 (97%)
Frame = +2
Query: 86 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGG 217
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDGQMP+DK++GG
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGG 44
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 93.1 bits (221), Expect = 2e-20
Identities = 37/43 (86%), Positives = 42/43 (97%)
Frame = +2
Query: 89 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGG 217
RE IS+H+GQAGVQIGNACWELYCLEHGIQPDGQMP+DK++GG
Sbjct: 1 REVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGG 43
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 86.6 bits (205), Expect = 2e-18
Identities = 37/44 (84%), Positives = 38/44 (86%)
Frame = +2
Query: 86 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGG 217
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MPT T G
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEG 44
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 86.6 bits (205), Expect = 2e-18
Identities = 36/44 (81%), Positives = 39/44 (88%)
Frame = +2
Query: 86 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGG 217
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MP+D+ G
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADG 44
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 86.6 bits (205), Expect = 2e-18
Identities = 36/44 (81%), Positives = 39/44 (88%)
Frame = +2
Query: 86 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGG 217
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MP+D+ G
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADG 44
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 86.6 bits (205), Expect = 2e-18
Identities = 37/44 (84%), Positives = 38/44 (86%)
Frame = +2
Query: 86 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGG 217
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MPT T G
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEG 44
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 83.8 bits (198), Expect = 1e-17
Identities = 34/40 (85%), Positives = 38/40 (95%)
Frame = +2
Query: 86 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDK 205
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MP+++
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQ 40
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 83.8 bits (198), Expect = 1e-17
Identities = 34/40 (85%), Positives = 38/40 (95%)
Frame = +2
Query: 86 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDK 205
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MP+++
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQ 40
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 82.6 bits (195), Expect = 3e-17
Identities = 33/43 (76%), Positives = 37/43 (86%)
Frame = +2
Query: 86 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIG 214
MRE +S+H+GQAGVQIGNACWELYCLEHGI PDG MP D + G
Sbjct: 1 MREIVSIHIGQAGVQIGNACWELYCLEHGITPDGLMPDDTSYG 43
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 78.2 bits (184), Expect = 7e-16
Identities = 31/44 (70%), Positives = 38/44 (86%)
Frame = +2
Query: 83 KMRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIG 214
+ RE IS+HVGQAGVQ+GNACWELYCLEHGIQPDG + + ++G
Sbjct: 5 RSREVISIHVGQAGVQMGNACWELYCLEHGIQPDGMINEEDSLG 48
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 77.8 bits (183), Expect = 1e-15
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 1/45 (2%)
Frame = +2
Query: 77 QYK-MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKT 208
QYK RE IS+HVGQAGVQIGNACWEL+CLEHGIQPDG D T
Sbjct: 3 QYKGSREVISIHVGQAGVQIGNACWELFCLEHGIQPDGYHVEDDT 47
>Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical
protein T28D6.2 protein.
Length = 444
Score = 74.9 bits (176), Expect = 7e-15
Identities = 31/34 (91%), Positives = 32/34 (94%)
Frame = +2
Query: 86 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDG 187
MRE IS+HVGQAGVQIGNACWELYCLEHGI PDG
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGILPDG 34
>Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical
protein ZK899.4 protein.
Length = 452
Score = 67.3 bits (157), Expect = 1e-12
Identities = 24/33 (72%), Positives = 29/33 (87%)
Frame = +2
Query: 89 RECISVHVGQAGVQIGNACWELYCLEHGIQPDG 187
REC+S+H+GQAG QIGNACWELYC+EHG+ G
Sbjct: 6 RECVSIHIGQAGAQIGNACWELYCIEHGLDEAG 38
>Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical
protein K01G5.7 protein.
Length = 449
Score = 46.4 bits (105), Expect = 3e-06
Identities = 20/34 (58%), Positives = 23/34 (67%)
Frame = +2
Query: 86 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDG 187
MRE + V GQ G QIG+ WE+ EHGIQPDG
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDG 34
>Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical
protein C36E8.5 protein.
Length = 450
Score = 46.4 bits (105), Expect = 3e-06
Identities = 20/34 (58%), Positives = 23/34 (67%)
Frame = +2
Query: 86 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDG 187
MRE + V GQ G QIG+ WE+ EHGIQPDG
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDG 34
>Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical
protein C54C6.2 protein.
Length = 444
Score = 45.2 bits (102), Expect = 6e-06
Identities = 20/34 (58%), Positives = 22/34 (64%)
Frame = +2
Query: 86 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDG 187
MRE + V GQ G QIG WE+ EHGIQPDG
Sbjct: 1 MREIVHVQAGQCGNQIGAKFWEVISDEHGIQPDG 34
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 44.4 bits (100), Expect = 1e-05
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = +2
Query: 86 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTI 211
MRE + + GQ G QIG+ WE+ EHGI P GQ D +
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDL 42
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 44.4 bits (100), Expect = 1e-05
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = +2
Query: 86 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTI 211
MRE + + GQ G QIG+ WE+ EHGI P GQ D +
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDL 42
>Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 42.7 bits (96), Expect = 3e-05
Identities = 20/39 (51%), Positives = 23/39 (58%)
Frame = +2
Query: 86 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD 202
M+E I+V VGQ G QIG WE EHG+Q DG D
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYKGD 39
>Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 42.7 bits (96), Expect = 3e-05
Identities = 20/39 (51%), Positives = 23/39 (58%)
Frame = +2
Query: 86 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD 202
M+E I+V VGQ G QIG WE EHG+Q DG D
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYKGD 39
>Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical
protein B0272.1 protein.
Length = 444
Score = 40.3 bits (90), Expect = 2e-04
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +2
Query: 86 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTI 211
MRE + + GQ G QIG WE+ EHGI P G D +
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGAYNGDSDL 42
>Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical
protein F58A4.8 protein.
Length = 444
Score = 34.7 bits (76), Expect = 0.009
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 98 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQ 190
++VHVGQ G Q+ A W+ EHGI GQ
Sbjct: 8 MTVHVGQCGNQLAQAFWKSMVDEHGINERGQ 38
>AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin
protein.
Length = 444
Score = 34.7 bits (76), Expect = 0.009
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 98 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQ 190
++VHVGQ G Q+ A W+ EHGI GQ
Sbjct: 8 MTVHVGQCGNQLAQAFWKSMVDEHGINERGQ 38
>AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin
(tba-6) protein.
Length = 435
Score = 31.9 bits (69), Expect = 0.063
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 152 LYCLEHGIQPDGQMPTDKT 208
++CLEHGIQPDG D T
Sbjct: 1 MFCLEHGIQPDGYHVEDDT 19
>AL021387-2|CAA16168.1| 463|Caenorhabditis elegans Hypothetical
protein H01A20.1 protein.
Length = 463
Score = 26.6 bits (56), Expect = 2.4
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 80 YKMRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMP-TDKT 208
Y R + +AG + +C CLE G++PD P DKT
Sbjct: 87 YVCRYSKKCRIDKAGRNVCRSCRFQKCLEVGMEPDAIRPDRDKT 130
>AF399825-1|AAK77200.1| 1262|Caenorhabditis elegans separase
protein.
Length = 1262
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +3
Query: 78 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSG 215
NT +S+ A E +++ SC+ L +++ ++VRC + +G
Sbjct: 356 NTLAYYSSIIEEAGSEKNAKLMRVSCVNLLSSNPIIVRCSTPKETG 401
>AF273769-1|AAG15118.1| 463|Caenorhabditis elegans nuclear receptor
NHR-3 protein.
Length = 463
Score = 26.6 bits (56), Expect = 2.4
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 80 YKMRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMP-TDKT 208
Y R + +AG + +C CLE G++PD P DKT
Sbjct: 87 YVCRYSKKCRIDKAGRNVCRSCRFQKCLEVGMEPDAIRPDRDKT 130
>AF083222-1|AAD03680.1| 463|Caenorhabditis elegans nuclear receptor
NHR-3 protein.
Length = 463
Score = 26.6 bits (56), Expect = 2.4
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 80 YKMRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMP-TDKT 208
Y R + +AG + +C CLE G++PD P DKT
Sbjct: 87 YVCRYSKKCRIDKAGRNVCRSCRFQKCLEVGMEPDAIRPDRDKT 130
>AC024791-1|AAF60651.1| 1262|Caenorhabditis elegans Separase protein
1 protein.
Length = 1262
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +3
Query: 78 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSG 215
NT +S+ A E +++ SC+ L +++ ++VRC + +G
Sbjct: 356 NTLAYYSSIIEEAGSEKNAKLMRVSCVNLLSSNPIIVRCSTPKETG 401
>Z48009-5|CAA88086.1| 329|Caenorhabditis elegans Hypothetical
protein AH6.7 protein.
Length = 329
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 103 CTRWPSRSPDRKCLLGAV 156
CT WPS+S DR + ++
Sbjct: 175 CTSWPSKSRDRSTMFFSI 192
>U39674-6|AAA80416.1| 291|Caenorhabditis elegans Hypothetical
protein C06E2.1 protein.
Length = 291
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 140 HFRSGLRLGQRVQRCTHAFCIEFFELKCR 54
H S + L + +C+ AF IEF LK R
Sbjct: 209 HALSLIHLENAIVKCSRAFTIEFDYLKLR 237
>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical
protein F48E3.8b protein.
Length = 1299
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = +3
Query: 66 FKKLNTKCVSASLYTLAKPESRSEMPAGSCIA 161
+ +N +C +A++ T A+PE+ S++ + C+A
Sbjct: 845 YTNINGQC-AANIVTPAEPETLSQVKSTKCLA 875
>U13071-1|AAL65794.1| 462|Caenorhabditis elegans Hypothetical
protein T22F7.5 protein.
Length = 462
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -1
Query: 191 SDHQVGCRAQGNTAPSRHFRSGLRLGQRVQRCTH 90
+DH V C A G + P+ +F ++ Q C H
Sbjct: 32 NDHPVVCTASGASCPTGYFCQFSDRNKQFQCCGH 65
>AF003389-10|AAC71135.2| 289|Caenorhabditis elegans Hypothetical
protein F23H11.7 protein.
Length = 289
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 105 YTLAKPESRSEMPAG 149
Y + PESRSE PAG
Sbjct: 30 YQVCAPESRSECPAG 44
>U80837-6|AAB37906.1| 172|Caenorhabditis elegans Hypothetical
protein F07E5.7 protein.
Length = 172
Score = 24.6 bits (51), Expect = 9.6
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 39 D*FILSTLKFKKLNTKCVSASLYTLAKPESRSEMPAGSCIAL 164
D +I STL F++ T+ ++ + + EMPA +C+ L
Sbjct: 8 DVYISSTLPFEETTTEMMTTMETSTMTEKVCPEMPATTCMDL 49
>AF273832-1|AAG15180.1| 408|Caenorhabditis elegans nuclear receptor
NHR-90 protein.
Length = 408
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 74 TQYKMRECISVHVGQAGVQIGNACWELYCLEHGIQ 178
T+Y +C+SVH G+A + C C E G++
Sbjct: 55 TKYLRLKCLSVHCGEA-ARFCKPCRLKRCYEAGMK 88
>AF022984-9|AAB69950.2| 393|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 90 protein.
Length = 393
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 74 TQYKMRECISVHVGQAGVQIGNACWELYCLEHGIQ 178
T+Y +C+SVH G+A + C C E G++
Sbjct: 40 TKYLRLKCLSVHCGEA-ARFCKPCRLKRCYEAGMK 73
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,874,754
Number of Sequences: 27780
Number of extensions: 82441
Number of successful extensions: 296
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,740,198
effective HSP length: 52
effective length of database: 11,295,638
effective search space used: 225912760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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