Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_F07
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    28   0.48 
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    25   3.4  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    25   5.9  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    24   7.8  
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    24   7.8  

>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 28.3 bits (60), Expect = 0.48
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 148  THTGAEGDFQHKEYLLDRDK 89
            THT A+GD +HK Y L +D+
Sbjct: 1254 THTKAKGDIEHKVYQLLKDQ 1273


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 149 YTHWRRRRLPTQRVP 105
           +THW RR L  QR+P
Sbjct: 409 FTHWSRRLLTFQRLP 423


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 80  YCIGTIQTDKYVNKCLYFN 24
           YC+ +++ D+YV+  + FN
Sbjct: 170 YCLNSLRKDQYVDLAIQFN 188


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 396 EVRQRRGCSHCIRRIARYTCPETKLSL*THIQLSLL 289
           +V +R  C +C R+I +  C E  + +   +QL L+
Sbjct: 83  QVSRRDTCFYCSRKIIKCICNEEHVGI-ESVQLKLI 117


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 402 RPEVRQRRGCSHCIRRIARYTCPETKLS 319
           R  V + R C H   + A+YTCPE  L+
Sbjct: 793 RISVLKSRACKH---KEAKYTCPEIFLN 817


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,575,795
Number of Sequences: 5004
Number of extensions: 29334
Number of successful extensions: 77
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)