Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_F06
(449 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy... 208 2e-55
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac... 208 2e-55
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo... 42 4e-05
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 30 0.19
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 2.3
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos... 26 3.1
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 25 4.1
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 25 5.4
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 25 7.1
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 24 9.4
>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 208 bits (509), Expect = 2e-55
Identities = 95/140 (67%), Positives = 112/140 (80%)
Frame = +2
Query: 29 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 208
MGKP G+ ARK NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1 MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60
Query: 209 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGRKGHAVGDIPGVRF 388
QPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEV ++GFGRKG A GDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRF 120
Query: 389 KXXXXXXXXXXXXYKEQKER 448
K + E+KE+
Sbjct: 121 KVVKVAGVGLSALFHEKKEK 140
>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 208 bits (509), Expect = 2e-55
Identities = 95/140 (67%), Positives = 112/140 (80%)
Frame = +2
Query: 29 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 208
MGKP G+ ARK NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1 MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60
Query: 209 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGRKGHAVGDIPGVRF 388
QPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEV ++GFGRKG A GDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRF 120
Query: 389 KXXXXXXXXXXXXYKEQKER 448
K + E+KE+
Sbjct: 121 KVVKVAGVGLSALFHEKKEK 140
>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
S12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 41.9 bits (94), Expect = 4e-05
Identities = 28/78 (35%), Positives = 45/78 (57%)
Frame = +2
Query: 155 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*V 334
G+ +G+ V+ K+PNSA+RK RV+L G+ VTA++P G ++ +E+ V +
Sbjct: 47 GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLL 103
Query: 335 AGFGRKGHAVGDIPGVRF 388
G GR D PGV++
Sbjct: 104 RG-GR----AQDCPGVQY 116
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 29.9 bits (64), Expect = 0.19
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 435 SLYRARSDTFATLTTLNLTPGMSPTAWP 352
S Y+ + DT+AT TLN PT WP
Sbjct: 1151 SKYKIK-DTYATFQTLNYIQNQQPTKWP 1177
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.2 bits (55), Expect = 2.3
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -3
Query: 435 SLYRARSDTFATLTTLNLTPGMSPTAWPLRPNPATHTSSFSSM 307
++Y + + +F T ++++ G S L P PA+ TSSFS++
Sbjct: 161 TIYSSATSSFPYSTDVSVSTGTSTDIVTLPP-PASSTSSFSTI 202
>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 25.8 bits (54), Expect = 3.1
Identities = 15/61 (24%), Positives = 26/61 (42%)
Frame = -2
Query: 205 GFNANFFEDDALSMRCTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPRFTHY 26
GF +++ + R E +RLP G + +V L T + L++ P + H
Sbjct: 350 GFKPSYYTNLNRIARYPIENIRLPITLVYGSNDNMVDIETLKTQLPPLSQCIQIPNYEHL 409
Query: 25 D 23
D
Sbjct: 410 D 410
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 25.4 bits (53), Expect = 4.1
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -2
Query: 406 CYVNHLKSDSRNVTNSVAFTTESCHSHL 323
C N+L ++ S + SCHSH+
Sbjct: 508 CITNNLNENTLKKLASAIYNDRSCHSHV 535
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 25.0 bits (52), Expect = 5.4
Identities = 13/58 (22%), Positives = 28/58 (48%)
Frame = -2
Query: 406 CYVNHLKSDSRNVTNSVAFTTESCHSHLIVLLNVVEATITRHECCHFLAVLNELYTNT 233
C +N L + R+ +++ F + H L++ + + I ++C L + L TN+
Sbjct: 1020 CLINELGPNLRSDSSTSHFAFDLAHQLLLLSRDTGDNIIHVYKCYQHLYLFTPLETNS 1077
>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 669
Score = 24.6 bits (51), Expect = 7.1
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -1
Query: 377 QECHQQRGLYDRILPLTP 324
+ C + R LYD++ P+TP
Sbjct: 320 KSCDEARLLYDQLTPITP 337
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 24.2 bits (50), Expect = 9.4
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = +2
Query: 92 WADKEFKKAHMGTRWKANPFGGASHAKGIV 181
W D EF H ++ PF +H K V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,949,085
Number of Sequences: 5004
Number of extensions: 39564
Number of successful extensions: 108
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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