Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_F06
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   232   1e-61
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    48   4e-06
AF036693-4|AAK29786.1|  360|Caenorhabditis elegans Hypothetical ...    28   2.7  
U58750-2|AAB00642.1|  615|Caenorhabditis elegans Polo kinase pro...    28   3.6  
AF059024-1|AAC14425.1|  615|Caenorhabditis elegans polo-like kin...    28   3.6  
Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical pr...    27   4.8  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  232 bits (567), Expect = 1e-61
 Identities = 105/140 (75%), Positives = 117/140 (83%)
 Frame = +2

Query: 29  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 208
           MGKP+G+ TARK   HR+EQRW DK +KKAH+GTRWK+NPFGGASHAKGIVLEK+GVEAK
Sbjct: 1   MGKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAK 60

Query: 209 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGRKGHAVGDIPGVRF 388
           QPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN +EENDEV V+GFGR GHAVGDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRF 120

Query: 389 KXXXXXXXXXXXXYKEQKER 448
           K            +K +KER
Sbjct: 121 KIVKVANTSLIALFKGKKER 140


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 47.6 bits (108), Expect = 4e-06
 Identities = 29/66 (43%), Positives = 42/66 (63%)
 Frame = +2

Query: 155 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*V 334
           G SH KGIVL+ V    K+PNS  RKC  V+L   G +V A++P  G  ++++E+ +V V
Sbjct: 72  GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL-STGAEVCAYIPNVG--HNLQEHSQVLV 128

Query: 335 AGFGRK 352
            G GR+
Sbjct: 129 KG-GRR 133


>AF036693-4|AAK29786.1|  360|Caenorhabditis elegans Hypothetical
           protein C49A9.6 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
 Frame = +2

Query: 26  VMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFG--------GASHAKGIV 181
           V  K   +  + KH  H  +  + D  FKK   GTRW    +G        G  + +G +
Sbjct: 235 VDSKTESLFVSNKH--HLEQGHFFDGNFKKNADGTRWTCQNYGQPVEQLAEGGINQRGKI 292

Query: 182 LEKVGVEAKQPNSAIRK 232
              V +E  QP    RK
Sbjct: 293 FFTVKIENFQPARGNRK 309


>U58750-2|AAB00642.1|  615|Caenorhabditis elegans Polo kinase
           protein 3 protein.
          Length = 615

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 415 RHVCYVNHLKSDSRNVTNSVAFTTESCHSHLIVLLNVVEATITRHE 278
           R++   +H   DS+NV     FT E C  + ++ LN     +T HE
Sbjct: 93  RNIVQFHHFFEDSQNVY----FTLELCSKNSLMELNKQRGPLTEHE 134


>AF059024-1|AAC14425.1|  615|Caenorhabditis elegans polo-like kinase
           protein.
          Length = 615

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 415 RHVCYVNHLKSDSRNVTNSVAFTTESCHSHLIVLLNVVEATITRHE 278
           R++   +H   DS+NV     FT E C  + ++ LN     +T HE
Sbjct: 93  RNIVQFHHFFEDSQNVY----FTLELCSKNSLMELNKQRGPLTEHE 134


>Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical
           protein T23D8.9a protein.
          Length = 811

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 272 TAFVPRDGCLNHIEEN 319
           T FVP+DG LN I+EN
Sbjct: 653 TPFVPKDGVLNVIDEN 668


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,096,799
Number of Sequences: 27780
Number of extensions: 237181
Number of successful extensions: 644
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)