Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_F05
         (380 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...   149   9e-37
U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p...    31   0.37 
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.       31   0.37 
Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical pr...    30   0.64 
Z98877-4|CAB54473.2|  796|Caenorhabditis elegans Hypothetical pr...    30   0.64 
Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical pr...    27   4.5  
U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical pr...    27   4.5  
U10401-10|AAA19062.2|  476|Caenorhabditis elegans Hypothetical p...    27   6.0  
Z74043-10|CAA98542.2|  653|Caenorhabditis elegans Hypothetical p...    26   7.9  
Z50070-2|CAB54253.1| 1069|Caenorhabditis elegans Hypothetical pr...    26   7.9  
Z50070-1|CAA90399.1| 1105|Caenorhabditis elegans Hypothetical pr...    26   7.9  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score =  149 bits (360), Expect = 9e-37
 Identities = 67/114 (58%), Positives = 83/114 (72%)
 Frame = +1

Query: 37  MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQCYX 216
           MGAY+Y+QE++RKK SD +R+LLRIR W YRQL+ +HR PRPTRP+KARRLGYRAKQ + 
Sbjct: 1   MGAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGFV 60

Query: 217 XXXXXXXXXXXXXPVPNGATYGKPKSHGVNQLKPTRNLQSIAEERVGRRCGGLR 378
                        PV  G TYGKPK+HGVN+LK  ++ Q++AE R GRR G LR
Sbjct: 61  VYRVRVRRGNRKRPVCKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLR 114


>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
            protein 40 protein.
          Length = 1415

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +2

Query: 164  RGQTRREGLDTVPSNVMLSSESACAVVAVNA-QCPMELPTANPRAMVSTN*NPLATCS 334
            R  T+  G    P +   SS S   ++A    Q P+   TA PR  V+   +P A+CS
Sbjct: 1279 RSFTQLAGATPPPPHSAASSSSRPTIIAAGGRQVPVGRATAQPRVNVANIYSPFASCS 1336


>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
          Length = 1415

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +2

Query: 164  RGQTRREGLDTVPSNVMLSSESACAVVAVNA-QCPMELPTANPRAMVSTN*NPLATCS 334
            R  T+  G    P +   SS S   ++A    Q P+   TA PR  V+   +P A+CS
Sbjct: 1279 RSFTQLAGATPPPPHSAASSSSRPTIIAAGGRQVPVGRATAQPRVNVANIYSPFASCS 1336


>Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical
           protein Y69H2.3c protein.
          Length = 731

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = +2

Query: 143 CTALPGPRGQTRREGLDTVPSNVMLSSESACAVVAVNAQCPMELPTANPRAMVSTN*NPL 322
           C  + G +  T R+G D V        E    V  V A CPM++   +   + ST   P 
Sbjct: 432 CVPMNGNQNSTARQGCDVVRCRANEVCEEQ-KVDCVKAPCPMQVACVSIVHLNSTTPAPG 490

Query: 323 ATCS 334
           +TC+
Sbjct: 491 STCA 494


>Z98877-4|CAB54473.2|  796|Caenorhabditis elegans Hypothetical
           protein Y69H2.3b protein.
          Length = 796

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = +2

Query: 143 CTALPGPRGQTRREGLDTVPSNVMLSSESACAVVAVNAQCPMELPTANPRAMVSTN*NPL 322
           C  + G +  T R+G D V        E    V  V A CPM++   +   + ST   P 
Sbjct: 497 CVPMNGNQNSTARQGCDVVRCRANEVCEEQ-KVDCVKAPCPMQVACVSIVHLNSTTPAPG 555

Query: 323 ATCS 334
           +TC+
Sbjct: 556 STCA 559


>Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical
           protein R03D7.2 protein.
          Length = 542

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 61  ELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPR 159
           EL R  + + +   ++ R W    LTR+HR P+
Sbjct: 264 ELKRAAIGEPLTLAVKGRRWPSMHLTRVHRCPK 296


>U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical
           protein K08D10.5 protein.
          Length = 602

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 61  ELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPR 159
           EL R  + + +   ++ R W    LTR+HR P+
Sbjct: 363 ELKRAAVGEPLTLAVKGRRWSSMHLTRVHRCPK 395


>U10401-10|AAA19062.2|  476|Caenorhabditis elegans Hypothetical
           protein T20B12.9 protein.
          Length = 476

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 283 KPKSHGVNQLKPTRNLQSIAEERVGRRCGGL 375
           K   H +NQ++ TR  +S A+E  G   GGL
Sbjct: 321 KVLGHWLNQIRKTRKKESKADEGGGGGVGGL 351


>Z74043-10|CAA98542.2|  653|Caenorhabditis elegans Hypothetical
           protein T19B10.3 protein.
          Length = 653

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 202 WHGIQAFSPCLASWAWERGAYESTGDIAT 116
           W+G +  +PC+ S+ ++    ES GD+ T
Sbjct: 332 WNGAETEAPCITSYDYDAPISES-GDVTT 359


>Z50070-2|CAB54253.1| 1069|Caenorhabditis elegans Hypothetical
           protein F43G6.1b protein.
          Length = 1069

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 372 TTTPASYTLLSNRLQVASGFQLVDTMA 292
           T  P    LLSN+  +A GF L+D ++
Sbjct: 538 TFRPGDVCLLSNKKHIAIGFALIDEVS 564


>Z50070-1|CAA90399.1| 1105|Caenorhabditis elegans Hypothetical
           protein F43G6.1a protein.
          Length = 1105

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 372 TTTPASYTLLSNRLQVASGFQLVDTMA 292
           T  P    LLSN+  +A GF L+D ++
Sbjct: 574 TFRPGDVCLLSNKKHIAIGFALIDEVS 600


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,997,399
Number of Sequences: 27780
Number of extensions: 175548
Number of successful extensions: 562
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)