Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_F04
         (260 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    26   0.95 
SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa...    24   2.9  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    23   5.1  
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    23   6.7  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    23   6.7  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    23   8.8  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    23   8.8  
SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|...    23   8.8  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    23   8.8  

>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 0.95
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -1

Query: 212 EEVTKLYSSPSLRSSTVGVTALAALRVISPTPSAFMKSLEVL 87
           +E T +YS+ SL  +  G  ALA L  +  TP   ++ L+++
Sbjct: 7   KESTIVYSALSLAQAGRGPEALALLEPLKSTPINSLELLDII 48


>SPACUNK4.17 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 128 SPTPSAFMKSLEVLGCGHLVFLTDEVPW 45
           +P P+       + GCG + F T E PW
Sbjct: 27  APEPTGPPFKCAIFGCGGINFGTAEGPW 54


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -1

Query: 251  SPGLNFISVVLNVEEVTKLYSSPSLRSSTVGVTALAALRVISP 123
            +P  NF++  + + ++T+ Y      SSTV +  L +L ++SP
Sbjct: 1028 APPSNFLTWEIIISDLTRTYHLIPRGSSTVSI-ILFSLFLVSP 1069


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 9/37 (24%), Positives = 16/37 (43%)
 Frame = -3

Query: 189 VTFLAQLHGWGHSISRLAGDQSHTECLHEIARSSRMW 79
           V F + LHGW  ++ + A   +    +       R+W
Sbjct: 209 VAFASGLHGWAFTVRQFANRYAKKFGIDRNKMMQRLW 245


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 9/37 (24%), Positives = 16/37 (43%)
 Frame = -3

Query: 189 VTFLAQLHGWGHSISRLAGDQSHTECLHEIARSSRMW 79
           V F + LHGW  ++ + A   +    +       R+W
Sbjct: 209 VAFASGLHGWAFTVRQFANRYAKKFGIDRNKMMQRLW 245


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 194 YSSPSLRSSTVGVTALAALRVISPT 120
           Y S S R+ST  VTA ++    +PT
Sbjct: 662 YRSYSQRASTPAVTAKSSFHYATPT 686


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -3

Query: 177 AQLH-GWGHSISRLAGDQSHTECLH 106
           + LH GW H++S+ +  QS  E L+
Sbjct: 245 SDLHLGWDHTVSKESMSQSIAEVLN 269


>SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 197

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 83  CGHLVFLTDEVPWXKED 33
           C ++V L+DE  W +ED
Sbjct: 124 CQYMVELSDEPLWIRED 140


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 104 KSLEVLGCGHLVFLTDEVPWXKEDFYLCDRK 12
           K L   GC ++V   D++P+   DF+ C R+
Sbjct: 167 KKLIKAGCKNVVIRCDDIPFA-SDFF-CSRE 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,038,114
Number of Sequences: 5004
Number of extensions: 18178
Number of successful extensions: 30
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)