Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_F04
(260 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0881 + 32473208-32473575,32473742-32473826,32473991-324740... 29 0.68
12_01_0227 - 1718726-1721183,1721804-1721957,1722090-1722165,172... 27 2.7
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 27 2.7
11_06_0050 + 19631164-19631987,19632103-19634023 26 3.6
08_02_0350 + 16123139-16124041 26 3.6
06_03_0106 + 16702019-16702600 26 3.6
02_04_0017 + 18937774-18937864,18938505-18940945 26 3.6
12_02_0064 + 13104835-13105311,13107731-13108119,13108156-131082... 26 4.8
12_01_0556 - 4514686-4514868,4515168-4515290,4515381-4515617,451... 26 4.8
05_05_0156 + 22792783-22793410,22797153-22797227,22797644-227988... 26 4.8
01_06_0662 + 30987187-30987277,30987825-30990214 26 4.8
06_01_0460 + 3276855-3277967 25 6.3
06_01_0394 - 2835438-2835896,2836664-2836913,2837197-2837669,283... 25 6.3
04_01_0103 + 1082077-1082167,1083037-1085477 25 6.3
02_03_0405 - 18653139-18653276,18653827-18653995,18654244-18654551 25 6.3
09_04_0411 + 17366559-17367497 25 8.4
08_02_1113 - 24384471-24384644,24384740-24384959,24385034-243851... 25 8.4
04_04_0388 + 24873624-24873806,24873908-24873979,24874088-248741... 25 8.4
>02_05_0881 +
32473208-32473575,32473742-32473826,32473991-32474053,
32474199-32474241,32474737-32474796,32475001-32475301,
32475554-32475668,32476168-32476272,32476338-32476517
Length = 439
Score = 28.7 bits (61), Expect = 0.68
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = -1
Query: 149 LAALRVISPTPSAFMKSLEVLGCGHLVFLTDEVPWXKEDFY 27
+ A+RV+ P + + LGC L LT +P+ ++++
Sbjct: 341 ITAIRVVRGNPYGYSADIWSLGCTVLEMLTQRIPYPDDNWF 381
>12_01_0227 -
1718726-1721183,1721804-1721957,1722090-1722165,
1722327-1722485,1722552-1722662,1722791-1722841,
1722948-1723192,1723745-1725278
Length = 1595
Score = 26.6 bits (56), Expect = 2.7
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -1
Query: 185 PSLRSSTVGVTAL---AALRVISPTPSAFMKSLEVLGCGHLV 69
PS++++ G L A LR ISP +A L L CGH V
Sbjct: 520 PSIQAAAPGPRWLRLAATLRPISPATAAVRYPLFPLACGHQV 561
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = -3
Query: 219 ECRRGDEIVFVTFLAQLHGWGHSISRLAGDQSHTECLHEIARSSRMW 79
+C E V F A LHGW ++S A + E R+W
Sbjct: 199 DCMVAPEKGTVAFSAGLHGWAFTLSNFAKMYKAKFKVDEAKMMERLW 245
>11_06_0050 + 19631164-19631987,19632103-19634023
Length = 914
Score = 26.2 bits (55), Expect = 3.6
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = -1
Query: 233 ISVVLNVEEVTKLYSSPSL---RSSTVGVTALAALRVISPTPSAFMKSLEVLGC 81
+S+ N EE K ++ SL RS TV L++L P+ F++ L+ GC
Sbjct: 531 LSIQTNEEEYVKQLATISLCHLRSLTVCGQGLSSLLPTLPSMCPFLRVLDFSGC 584
>08_02_0350 + 16123139-16124041
Length = 300
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 230 SVVLNVEEVTKLYSSPSLRSSTVGVTALAALRVISPT--PSA 111
SV + T L +PS +S++G+ AL SPT PSA
Sbjct: 39 SVAMAAPAATSLPGAPSPAASSLGLAALVTPACFSPTALPSA 80
>06_03_0106 + 16702019-16702600
Length = 193
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -3
Query: 189 VTFLAQLHGWGHSISRLAGDQSHTECLHE 103
VT HGW H + R+ S +C+ E
Sbjct: 81 VTAFCPHHGWTHHLRRVISPPSSPDCMPE 109
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -3
Query: 189 VTFLAQLHGWGHSISRLAGDQSHTECLHEIARSSRMW 79
V F A LHGW ++S A + + E R+W
Sbjct: 209 VAFSAGLHGWAFTLSSFAKMYASKFGVDEFKMMERLW 245
>12_02_0064 +
13104835-13105311,13107731-13108119,13108156-13108286,
13108378-13108469,13108488-13109264,13109291-13109320
Length = 631
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Frame = +3
Query: 45 PWXFIGKKYKMTT---SENFERFHEGTRCGTD 131
PW F G +M SE ER H G CG D
Sbjct: 97 PWRFGGWGARMAAAAGSETEERSHGGGECGRD 128
>12_01_0556 -
4514686-4514868,4515168-4515290,4515381-4515617,
4515747-4516358
Length = 384
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 133 TRKAANAVTPTVELRKEGDEYNFVTSSTFKTTEMKFKPGEE 255
T ++A TVEL K+GD F T S K ++F G+E
Sbjct: 263 TGRSAVIDVGTVELIKKGDIKVFGTISCIKGNVVEFDDGKE 303
>05_05_0156 +
22792783-22793410,22797153-22797227,22797644-22798879,
22798947-22799155,22799240-22800209,22800395-22800465
Length = 1062
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 189 VTFLAQLHGWGHSISRLAGDQSHTECLHEIARSSRMW 79
V F + LHGW +IS A S + E R+W
Sbjct: 390 VVFSSGLHGWAVAISNFAKMYSSKFKVEESKMIDRLW 426
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -3
Query: 189 VTFLAQLHGWGHSISRLAGDQSHTECLHEIARSSRMW 79
V F A LHGW ++S A + + E R+W
Sbjct: 209 VAFSAGLHGWAFTLSNFAKMYASKFGVDESKMMERLW 245
>06_01_0460 + 3276855-3277967
Length = 370
Score = 25.4 bits (53), Expect = 6.3
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = -1
Query: 254 SSPGLNFISVVLNVEEVTKLYSSPSLRSSTVGVTALAALRVISPTPSAFMKSL 96
S+P NF++ +L+ L S PSL SST + ALA R+ + P A + +L
Sbjct: 79 SAPTFNFLAGLLD-----PLLSHPSLPSST--LLALALARLATGLPYATLAAL 124
>06_01_0394 -
2835438-2835896,2836664-2836913,2837197-2837669,
2838941-2840608
Length = 949
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -3
Query: 159 GHSISRLAGDQSHTECL 109
GH + RLAGD+ H L
Sbjct: 741 GHRVRRLAGDEEHRRAL 757
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -3
Query: 189 VTFLAQLHGWGHSISRLAGDQSHTECLHEIARSSRMW 79
V F A LHGW ++S A + + E R+W
Sbjct: 209 VAFSAGLHGWAFTLSSFAKMYASKFGVDESKMMERLW 245
>02_03_0405 - 18653139-18653276,18653827-18653995,18654244-18654551
Length = 204
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 123 HTECLHEIARSSRMWSSCISYR 58
H +CL +I R SR+W CI R
Sbjct: 3 HYKCLDKIGRKSRVW--CIGCR 22
>09_04_0411 + 17366559-17367497
Length = 312
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 131 ISPTPSAFMKSLEVLGCGHLVFLTDEVPW 45
++PT A +LE LGC L+ T + W
Sbjct: 227 MNPTAPAGAPALEKLGCERLLVCTAQEDW 255
>08_02_1113 -
24384471-24384644,24384740-24384959,24385034-24385176,
24385265-24385321,24385476-24385575,24385694-24385755,
24386120-24386138,24386269-24386322,24386441-24386625
Length = 337
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 140 LRVISPTPSAFMKSLEVLGC 81
LR+ P P+AF S EV GC
Sbjct: 106 LRMFEPDPAAFGTSSEVDGC 125
>04_04_0388 +
24873624-24873806,24873908-24873979,24874088-24874150,
24874413-24874764,24874869-24875060,24875356-24875774
Length = 426
Score = 25.0 bits (52), Expect = 8.4
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 170 STVGVTA-LAALRVISPTPSAFMKSLEVLGCGHLV 69
S GV A LAA+ S TP+A MK V LV
Sbjct: 146 SVAGVAAALAAIAAESSTPAATMKETAVASAAALV 180
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,040,792
Number of Sequences: 37544
Number of extensions: 134807
Number of successful extensions: 349
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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