Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_F04
         (260 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    68   2e-14
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   1.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   5.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   5.8  

>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 67.7 bits (158), Expect = 2e-14
 Identities = 31/53 (58%), Positives = 39/53 (73%)
 Frame = +1

Query: 100 DFMKALGVGLITRKAANAVTPTVELRKEGDEYNFVTSSTFKTTEMKFKPGEEF 258
           DFMKALGVG++TRK  ++V+P VEL +    Y   T+S FK TE+KFK GEEF
Sbjct: 19  DFMKALGVGIMTRKVGSSVSPVVELTENNGLYTLKTTSPFKNTEIKFKLGEEF 71



 Score = 29.1 bits (62), Expect = 0.009
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 54  FIGKKYKMTTSENFERFHEGTRCG 125
           F+GK+YK+ +SENF+ F +    G
Sbjct: 4   FLGKRYKLYSSENFDDFMKALGVG 27


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 1.1
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -1

Query: 236 FISVVLNVEEVTKLYSSPSLRSSTV 162
           FIS+++  +E+  + +SP L + T+
Sbjct: 9   FISLIILNDEIYNIIASPQLNNPTL 33


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 5.8
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -1

Query: 65  LTDEVPWXKEDFYLCDRKN 9
           L   V   +E FYLC   N
Sbjct: 772 LLQHVKEDREGFYLCQASN 790


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 5.8
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -1

Query: 65  LTDEVPWXKEDFYLCDRKN 9
           L   V   +E FYLC   N
Sbjct: 768 LLQHVKEDREGFYLCQASN 786


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,548
Number of Sequences: 438
Number of extensions: 1096
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4762122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)