Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_F03
         (315 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   1.3  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   1.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   2.3  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   4.0  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   4.0  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    20   7.1  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    20   7.1  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    19   9.4  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = +2

Query: 164 PKWQPGETPAQVRPKDNLKPE---GDFDRPQKT 253
           P WQ GE+ A  R + +L+ +     F RP+ T
Sbjct: 222 PVWQGGESEALARLERHLERKAWVASFGRPKMT 254



 Score = 19.8 bits (39), Expect = 7.1
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 83  WQPGDTPAQVRPKDNLKPQGEFEHPSKPKWQP 178
           WQ G++ A  R + +L+ +       +PK  P
Sbjct: 224 WQGGESEALARLERHLERKAWVASFGRPKMTP 255


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 191 AQVRPKDNLKPEGDFDRPQKTKWTSSERP 277
           + V P  +   E  F R Q+ +WTSS+ P
Sbjct: 665 SDVGPSGDCFYENKFYR-QEAQWTSSDNP 692


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 2.3
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +2

Query: 164  PKWQPGETPAQVRPKDNLKPEGDFDRPQ 247
            P+WQP E    + P     P  +  +PQ
Sbjct: 1367 PEWQPTEWHPPIPPTSEKPPLPEELKPQ 1394



 Score = 20.2 bits (40), Expect = 5.4
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 183  KPQPKCVL 206
            KP PKC+L
Sbjct: 2194 KPDPKCIL 2201


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -1

Query: 195 WAGVSPGCHLGLEGCSNSPC 136
           W G    C++  + CS +PC
Sbjct: 98  WEGAL--CNINTDDCSPNPC 115



 Score = 19.4 bits (38), Expect = 9.4
 Identities = 5/13 (38%), Positives = 7/13 (53%)
 Frame = -1

Query: 174 CHLGLEGCSNSPC 136
           CH  +  C  +PC
Sbjct: 65  CHENINDCKVNPC 77


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = -3

Query: 262 CPFSFLRSIEITLRFQIIFRTHLGWGFSWLPFR 164
           C    L  I    R  IIF TH    FS  P +
Sbjct: 290 CALIILLCIYYFCRAFIIFPTHFYCAFSLYPLK 322


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 19.8 bits (39), Expect = 7.1
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +2

Query: 149 EHPSKPKW 172
           EH SKP W
Sbjct: 236 EHESKPNW 243


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 19.8 bits (39), Expect = 7.1
 Identities = 5/13 (38%), Positives = 8/13 (61%)
 Frame = -1

Query: 174 CHLGLEGCSNSPC 136
           C L ++ C  +PC
Sbjct: 219 CELNVDDCKPNPC 231



 Score = 19.4 bits (38), Expect = 9.4
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -1

Query: 186 VSPGCHLGLEGCSNSPC 136
           V P C   +  C ++PC
Sbjct: 291 VGPRCEGDINECLSNPC 307


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 137 QGEFEHPSK 163
           Q E+EHPS+
Sbjct: 326 QNEYEHPSE 334


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,102
Number of Sequences: 336
Number of extensions: 1648
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5836655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)