Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_F03
(315 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 28 0.38
SPAC22H12.01c |mug35|SPAC23G3.13c|sequence orphan|Schizosaccharo... 25 2.0
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 25 2.0
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||... 25 2.7
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 25 2.7
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 25 2.7
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 25 2.7
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 25 3.6
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 25 3.6
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb... 25 3.6
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 24 4.7
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 24 4.7
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 24 4.7
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 24 4.7
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3... 24 6.3
SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces po... 23 8.3
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 23 8.3
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 27.9 bits (59), Expect = 0.38
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Frame = +2
Query: 2 HEAESPDRKPKDHLYPENKFYDKQKGQWQPGDTPAQVRPKDNLKPQGEFEHPSKPKW--- 172
H+ +S + K +D KF DK + ++ P+ +P +++ E + PS+ +
Sbjct: 170 HDKDS-NEKIEDVNEKTIKFADKSQEEFNENGPPSG-QPNGHIESDNESKSPSQKESNES 227
Query: 173 ---QPGETPAQVRPKDNLKPE 226
Q ETP+ V PK PE
Sbjct: 228 EDIQIAETPSNVTPKKKPSPE 248
>SPAC22H12.01c |mug35|SPAC23G3.13c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 25.4 bits (53), Expect = 2.0
Identities = 13/47 (27%), Positives = 17/47 (36%)
Frame = +2
Query: 32 KDHLYPENKFYDKQKGQWQPGDTPAQVRPKDNLKPQGEFEHPSKPKW 172
KDH YDK + Q D+ + D + H KP W
Sbjct: 105 KDHSLKLMGLYDKTQKQLLRRDSSGDLTSTDKERDVSPVSHSEKPYW 151
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 25.4 bits (53), Expect = 2.0
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +2
Query: 161 KPKWQPGETPAQVRPKDNLKPE--GDFDRPQKTKWTSSERPDQVK 289
K K QP + RP+ ++PE G KW+ R D +K
Sbjct: 44 KRKKQPARKQIETRPEYEMEPEQPGQVYNLWYNKWSGGMRQDPLK 88
>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 625
Score = 25.0 bits (52), Expect = 2.7
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -1
Query: 291 GLT*SGLSEDVHLVF*GLSKSPSGFKLSLGRTWAGVSPGCHLGLEGCSNS 142
GLT GL + + V K +G + L T G+SP LG+ G S+S
Sbjct: 168 GLTVIGLRQWLARVIPASLKFATGAGIGLYLTIIGLSPSAGLGVIGHSSS 217
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.0 bits (52), Expect = 2.7
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +2
Query: 95 DTPAQVRPKDNLKPQGEFEHPSKPKWQPGETPAQVRPKDNLK--PEGDFDRPQKTKWTSS 268
D P + P +N +G E+PS + P +V DN+K P D + T +S
Sbjct: 944 DVPHLLDPDNNFNLKGNPENPSSTFFTPEILSPKVY-SDNVKDEPVEDIFGFEDTSESSP 1002
Query: 269 ERPDQVK 289
+P Q++
Sbjct: 1003 GKPSQLR 1009
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 25.0 bits (52), Expect = 2.7
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +2
Query: 41 LYPENKFYDKQKGQWQPGDTPAQVRPKDNLKPQGEFEHPSKP 166
LYP YD +K QW T +VR D + E P+ P
Sbjct: 1274 LYPNILRYDYEKRQWSTLSTNKRVRILD-VSVNNRSELPNMP 1314
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 25.0 bits (52), Expect = 2.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 60 STINKKVNGNQEILQLKFDQRTT*SHKVNLNILPN 164
ST+N NG+ ++L +F T + V N++ N
Sbjct: 143 STLNHYNNGSHQVLHPQFQNGTNAPYVVQSNLMQN 177
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 24.6 bits (51), Expect = 3.6
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = +3
Query: 204 LKII*NLRVISIDLKKLN---GHPLKDRIKL 287
L+++ +I DLK N HPLK RIKL
Sbjct: 632 LRLLQGQNIIHCDLKPENLLLSHPLKARIKL 662
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 24.6 bits (51), Expect = 3.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 276 GLSEDVHLVF*GLSKSPSGFKLSLGRTW 193
GL E V LVF ++ SGF ++ R W
Sbjct: 213 GLGEKVGLVFFAIATFVSGFVIAFIRHW 240
>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 24.6 bits (51), Expect = 3.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 108 KFDQRTT*SHKVNLNILPNLNGNQEKPQPK 197
KFD+R S K N++P+ + N QP+
Sbjct: 22 KFDKRPFASQKFPENLVPDNSSNDANSQPE 51
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 24.2 bits (50), Expect = 4.7
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -3
Query: 292 RFNLIRSFRGCPFSFLRSIEITLRFQIIFRTHLGWGFSWLP-FRFGRMF 149
+ L++S R SFL +E L F +++RT +G + F F + F
Sbjct: 40 KIRLVKSIRD---SFLSQLENILCFFLVYRTTYSFGVCLMKRFLFNKFF 85
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 24.2 bits (50), Expect = 4.7
Identities = 7/21 (33%), Positives = 16/21 (76%)
Frame = +2
Query: 2 HEAESPDRKPKDHLYPENKFY 64
++A +P++ PKD + PE +++
Sbjct: 72 NQATAPEKLPKDVIIPEEEYH 92
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 24.2 bits (50), Expect = 4.7
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 54 TNSTINKKVNGNQEILQLKFDQRTT*SHKVNLNILPNLNGNQEK 185
+NS+I++ +N ILQ K ++ HK+N N+++
Sbjct: 409 SNSSIDRVLNQQAYILQYKRKSTSSSKHKLNTENTVTKTSNKKR 452
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 24.2 bits (50), Expect = 4.7
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +2
Query: 143 EFEHPSKPKWQPGETPAQVRPKDNLKPEGDFDRPQKTK--WTSSERPDQVKP 292
E+ P KPK G+ + RPK + P KT+ S+E+P+ P
Sbjct: 79 EYPPPEKPKKAHGKGKSSKRPK-AVDRRRSITAPSKTEPSTPSTEKPEPSTP 129
>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 555
Score = 23.8 bits (49), Expect = 6.3
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = +2
Query: 119 KDNLKPQGE-FEHPSKPKWQPGET 187
K +LK Q E HP+ P WQ T
Sbjct: 107 KSSLKQQLESLIHPTSPNWQDAST 130
>SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 418
Score = 23.4 bits (48), Expect = 8.3
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 153 ILPNLNGNQEKPQPKCVLKII*NLRVISIDLKK 251
I P +NGN P P L + N +I L++
Sbjct: 12 IKPPMNGNPYGPNPSDFLSRVNNFSIIESTLRE 44
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 23.4 bits (48), Expect = 8.3
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 63 TINKKVNGNQEILQLKFDQRTT*SHKVNLNILPN 164
T+N+ N N I +LKF ++ LN L N
Sbjct: 669 TVNENNNKNLSIAELKFQVAAYERNEARLNELAN 702
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,314,977
Number of Sequences: 5004
Number of extensions: 27474
Number of successful extensions: 72
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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