Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_F03
         (315 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    20   6.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    20   6.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   8.1  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +2

Query: 143 EFEHPSKPKWQPGETPAQVRPKDNLKPEGDFDR 241
           EF+ P++P +   E  A   P       GD+ +
Sbjct: 2   EFKQPNRPSYCTWELNATNSPHTCRTKNGDYTK 34


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 180 PGCHLGLEGCSNS 142
           PG HLG+  C+ S
Sbjct: 753 PGDHLGVFACNRS 765


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +2

Query: 2    HEAESPDRKPKDHLYPENKFYDKQKGQW 85
            H   SP+     +  PE   Y  Q GQ+
Sbjct: 1800 HNVFSPEYDDPANCAPEEDQYGSQYGQY 1827


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,851
Number of Sequences: 438
Number of extensions: 1873
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)