Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_F02
(247 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 0.35
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 25 1.1
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 25 1.4
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster... 23 4.3
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p... 23 5.6
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 23 5.6
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 23 5.6
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 7.4
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 23 7.4
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 23 7.4
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 23 7.4
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 23 7.4
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 22 9.8
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 22 9.8
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 22 9.8
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 22 9.8
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 22 9.8
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 27.1 bits (57), Expect = 0.35
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = -3
Query: 116 CNVDTASLDEHPSIHSWYISGSISV*LLTNTSTS 15
C++++AS+ + + W + S+S + TNT++S
Sbjct: 340 CSINSASMSSNTTYFYWNSTSSLSSSVFTNTTSS 373
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 1.1
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = -3
Query: 236 DNFDGTVR--SLSKRANVL*WSKTSLAINSTEAPSFRAAPR*CNVDTASLDEHPSIHSWY 63
DNF+ ++R + + R+++ + S + +PS AP NVDT S+D S+ S +
Sbjct: 224 DNFNISIRPNTTNYRSSI---QENSNGNRDSISPSAYDAPLLHNVDTQSIDGFVSVASHF 280
Query: 62 ISGS 51
S S
Sbjct: 281 SSAS 284
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 25.0 bits (52), Expect = 1.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 68 SYGLRDAHLVKQCLHCINVE 127
S G RD H + C +C+++E
Sbjct: 287 SLGFRDIHAKEACQYCVSLE 306
>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 480
Score = 23.4 bits (48), Expect = 4.3
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +2
Query: 107 LHCINVEQHENLVPLLS**PAMFWTTTEHSPFWRDSS 217
LHC + N++P + P++ T+ H P+ D +
Sbjct: 63 LHCPSTNGKTNVLPSYASTPSLSPMTSSHFPYASDGT 99
>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 446
Score = 23.0 bits (47), Expect = 5.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 60 FRIYKRVITNEYVYFCVPSC 1
F + KR+ITNEY+ V C
Sbjct: 361 FPVLKRMITNEYLNSDVRIC 380
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 23.0 bits (47), Expect = 5.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 133 RKLGASVELIASDVLDHYRTFAL 201
R++ S+ +A+D + Y TFAL
Sbjct: 309 RQVKTSISFLANDTSNVYETFAL 331
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 23.0 bits (47), Expect = 5.6
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 77 LRDAHLVKQCLHCINVEQHEN 139
++DAHL +Q + C++ Q N
Sbjct: 291 IKDAHLPQQGISCLSFSQDGN 311
>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 22.6 bits (46), Expect = 7.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 81 LNP*LVYFRIYKRVITNEYVYF 16
LN + F +YK + NEY+ F
Sbjct: 36 LNTIVCIFYVYKIALCNEYIRF 57
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 22.6 bits (46), Expect = 7.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 181 GPKHRWLSTQQRHQVFVLLHVDAM 110
GP R S + HQ F LLH+ +
Sbjct: 230 GPASRNRSKELAHQKFYLLHLSLL 253
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 22.6 bits (46), Expect = 7.4
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +1
Query: 34 SNYTLIDPEIYQLWIEGCSSSEAVSTLHQRGAAR 135
S YT++ P++ ++ ++ A T H R +A+
Sbjct: 503 SAYTMVPPDLDEICVDFVQKFGAWITYHHRRSAK 536
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 22.6 bits (46), Expect = 7.4
Identities = 16/62 (25%), Positives = 25/62 (40%)
Frame = +1
Query: 31 VSNYTLIDPEIYQLWIEGCSSSEAVSTLHQRGAARKLGASVELIASDVLDHYRTFALLER 210
VS + D Y W+E C A S H L + ++I+ + H +LE+
Sbjct: 431 VSQISASDGYPYVAWVEHCKDKSATS--HIETLLESLETNSQIISLSKVQH--LLGILEK 486
Query: 211 LL 216
L
Sbjct: 487 SL 488
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 22.6 bits (46), Expect = 7.4
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = +1
Query: 64 YQLWIEGCSSSEAVSTLHQRGAARKLGASVELIASDVLDHYRTFALLERLLTV 222
+Q+W S + L Q+G + S EL+A+ + + Y + +L+ +
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSELVAAKLKNSYLMDGMTLKLVDI 312
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 22.2 bits (45), Expect = 9.8
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = -2
Query: 150 RGTKFSCCSTLMQCRHC 100
R +FSCC + C C
Sbjct: 337 RWFRFSCCDRVYPCDEC 353
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 22.2 bits (45), Expect = 9.8
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -3
Query: 218 VRSLSKRANVL*WSKTSLAINSTEAPSFR 132
+ ++SK+ + L S +S +INS+ +PS +
Sbjct: 556 IPAISKQPSYLSISSSSKSINSSPSPSIQ 584
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 22.2 bits (45), Expect = 9.8
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 195 ECSVVVQNIAGYQLN 151
E VVVQ + GY++N
Sbjct: 255 EAQVVVQTLNGYEIN 269
>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 22.2 bits (45), Expect = 9.8
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 174 FGPLQNIRPFGETP 215
F P++ IRPF E P
Sbjct: 81 FFPIKRIRPFHENP 94
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 22.2 bits (45), Expect = 9.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 86 AHLVKQCLHCINVEQHENLVPL 151
+HL+ +HC+ E E LV L
Sbjct: 565 SHLLHNQVHCLTEEDLEELVNL 586
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,043,175
Number of Sequences: 5004
Number of extensions: 17993
Number of successful extensions: 56
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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