Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_F02
(247 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0308 + 7137099-7137132,7137495-7137611,7138252-7138319,713... 27 1.6
10_02_0169 - 6142199-6142581,6143015-6143095,6143313-6143691,614... 27 2.1
01_06_0515 - 29959149-29959253,29959510-29959633,29959702-299597... 27 2.1
06_01_0332 - 2398683-2399316,2399933-2399983,2400455-2400528,240... 27 2.8
11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195 26 3.7
05_03_0167 - 9111581-9111694,9111864-9112358 26 3.7
10_08_0381 + 17398972-17399014,17400823-17400981,17401066-174012... 25 6.4
08_02_1217 - 25347555-25347600,25348519-25348649,25348753-253491... 25 8.5
03_01_0035 - 322993-323280,323385-323528,324055-324180,324827-32... 25 8.5
02_05_1021 + 33565866-33567431,33568317-33568604 25 8.5
>09_02_0308 +
7137099-7137132,7137495-7137611,7138252-7138319,
7138413-7138538,7138650-7139619,7139641-7139737,
7140026-7140113,7140336-7140396,7140425-7140447,
7140663-7140776,7141193-7141306,7144731-7144825,
7146506-7146824,7147166-7147309,7147463-7147564,
7147868-7147971,7148121-7148247,7148804-7148845,
7148939-7149091,7149326-7149426,7149807-7150227
Length = 1139
Score = 27.5 bits (58), Expect = 1.6
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 191 HSPFWRDSSRFHQS 232
H+P W++SSRFH S
Sbjct: 234 HTPSWQNSSRFHNS 247
>10_02_0169 -
6142199-6142581,6143015-6143095,6143313-6143691,
6144019-6144372
Length = 398
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 91 SSEAVSTLHQRGAARKLGASVELIASDVLD 180
S E V + RGA LGASV ++ DV D
Sbjct: 260 SVENVKAITTRGALCDLGASVSVMPKDVFD 289
>01_06_0515 -
29959149-29959253,29959510-29959633,29959702-29959793,
29959921-29960003,29960573-29960654,29960707-29960784,
29960875-29960967,29961647-29961734,29961822-29961991
Length = 304
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = -2
Query: 213 ESLQKGECSVVVQNIAGYQLNRGTKFSCCSTLMQCRHC 100
+ +K E ++ A Y+ + CC+ + CRHC
Sbjct: 44 DDYEKLEEGIMQYGCAHYRRRCRIRAPCCNEIFDCRHC 81
>06_01_0332 -
2398683-2399316,2399933-2399983,2400455-2400528,
2400685-2400782,2400874-2400956,2401323-2401582
Length = 399
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 31 VSNYTLIDPEIYQLWIEGCSSSEAVSTLHQRGAARKLGA 147
++ T D Y W++ SSS A T H G +GA
Sbjct: 234 INAVTNFDLSTYIRWLKPPSSSSAAGTPHHHGGGMVVGA 272
>11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195
Length = 767
Score = 26.2 bits (55), Expect = 3.7
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +1
Query: 61 IYQLWIEGCSSSEAVSTLHQRGAARKLGASVELIASDVLDHYRTFALLERLLTVPSKLSE 240
+YQ+ S SE + GA +K + +E I SD+L Y+ L ++T+ S L++
Sbjct: 330 VYQMKPLNKSDSENLFLTRTFGAEKKCPSQLEGIISDIL--YKCDGLPLAIITIASLLAD 387
Query: 241 Q 243
+
Sbjct: 388 K 388
>05_03_0167 - 9111581-9111694,9111864-9112358
Length = 202
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 178 PKHRWLSTQQRHQVFVLLH 122
P H+ LS Q+RHQ+ LLH
Sbjct: 176 PLHQQLSQQRRHQLPYLLH 194
>10_08_0381 +
17398972-17399014,17400823-17400981,17401066-17401241,
17401565-17401842,17401938-17402073,17402183-17402294,
17402421-17402515
Length = 332
Score = 25.4 bits (53), Expect = 6.4
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Frame = +1
Query: 91 SSEAVSTLHQRGA----ARKLGASVELIASDVLDHYRTFAL 201
++E +ST+ QRGA ARK +++ AS DH R + L
Sbjct: 221 NTEFISTVQQRGAAIIKARKQSSALS-AASSACDHIRDWVL 260
>08_02_1217 -
25347555-25347600,25348519-25348649,25348753-25349190,
25352581-25352674,25352794-25352891
Length = 268
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 70 LWIEGCSSS-EAVSTLHQRGAARKLGASVELIASDVLDHYR 189
LW G + EAV HQ AR+ G+ +L + V + R
Sbjct: 62 LWKHGVGAQVEAVGVGHQTRTARRKGSGADLAVNKVKNDNR 102
>03_01_0035 -
322993-323280,323385-323528,324055-324180,324827-324882,
325497-325517,327153-327420,327904-329787
Length = 928
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -2
Query: 216 EESLQKGECSVVVQNIAGYQLNRGTKFSC 130
EE + KG C + G + ++GT+ +C
Sbjct: 199 EEEMTKGPCRNAAPQLIGGESSKGTEANC 227
>02_05_1021 + 33565866-33567431,33568317-33568604
Length = 617
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 219 REESLQKGECSVVVQNIAGYQLNRGTKFSC 130
R +++ S V+Q G+Q +RGT F C
Sbjct: 378 RVQTIGSSSESPVLQWSQGHQFSRGTNFQC 407
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,602,194
Number of Sequences: 37544
Number of extensions: 113502
Number of successful extensions: 312
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 14,793,348
effective HSP length: 60
effective length of database: 12,540,708
effective search space used: 263354868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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