Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_F02
(247 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28943| Best HMM Match : FIBP (HMM E-Value=1.3e-06) 63 3e-11
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.3
SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_12811| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.1
SB_37654| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.4
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.4
SB_14894| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.4
SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.4
SB_14465| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.4
SB_12067| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.4
SB_38851| Best HMM Match : RVT_1 (HMM E-Value=9.8e-20) 25 9.4
SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.4
SB_22182| Best HMM Match : DUF1626 (HMM E-Value=1.7) 25 9.4
SB_7921| Best HMM Match : DUF842 (HMM E-Value=3.9e-07) 25 9.4
SB_4318| Best HMM Match : Ligase_CoA (HMM E-Value=0) 25 9.4
>SB_28943| Best HMM Match : FIBP (HMM E-Value=1.3e-06)
Length = 247
Score = 63.3 bits (147), Expect = 3e-11
Identities = 30/77 (38%), Positives = 46/77 (59%)
Frame = +1
Query: 16 EVDVFVSNYTLIDPEIYQLWIEGCSSSEAVSTLHQRGAARKLGASVELIASDVLDHYRTF 195
+++VF+ + T +D E+Y LW++G S EA + G+ K GA+ +I SD DHYR F
Sbjct: 90 DINVFIMDPTQVDLEVYDLWLQGLSEIEASNHRITDGSLVKYGATHTIITSDTRDHYRLF 149
Query: 196 ALLERLLTVPSKLSEQM 246
+LE L P L +Q+
Sbjct: 150 NMLEHFLQNPLVLGKQL 166
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 73 WIEGCSSSEAVSTLHQRGAARKLGASVELIASD 171
W++ C ++V TLH GAA+ + ++SD
Sbjct: 240 WLKMCKMRKSVCTLHLIGAAKCMPKVAHCLSSD 272
>SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 620
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -2
Query: 162 YQLNRGT-KFSCCSTLMQCRHCFTR*ASLNP 73
Y+L+ T + + CS QCRHC R L+P
Sbjct: 63 YELDSSTLEPAWCSERHQCRHCRVRTEDLHP 93
>SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2209
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 105 VYIASTWSSTKTWCLC*VDSQRCFGPLQNIRPF 203
V + STWS+ +TWC GP+ +RPF
Sbjct: 2132 VSMPSTWSTVRTWC----------GPVYFVRPF 2154
>SB_12811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1254
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +1
Query: 34 SNYTLIDPEIYQLWIEGCSSSEAVSTLHQ 120
S++ L+DPE+ + +G SE +S + +
Sbjct: 1101 SDFALVDPEVLSPYFDGIEESEELSRVRR 1129
>SB_37654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -3
Query: 128 APR*CNVDTASLDEHPSIHSWYISGSI 48
AP+ C + + +L HPS+ + + GS+
Sbjct: 630 APKKCYIMSITLKRHPSVGVYSLCGSV 656
>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1569
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -3
Query: 221 TVRSLSKRANVL*WSKTSLAINSTEAPSFRAAPR*CNVDTASLDEH 84
++RS +KR + + A+ PS R+A + V SLDEH
Sbjct: 790 SLRSANKRRDAKALEVVT-AVQPVNTPSLRSAQQQITVANTSLDEH 834
>SB_14894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1052
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 10 YTEVDVFVSNYTLIDPEIYQ 69
Y E+D+ +YTLIDP Y+
Sbjct: 485 YPELDLNNGSYTLIDPVYYR 504
>SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 352
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 224 GTVRSLSKRANVL*WSKTSLAINSTEAPSFRAAPR*CNV 108
G RS++K+ VL S SL ++ E P R C +
Sbjct: 259 GRTRSVNKQVKVLQRSSMSLELDEFEVPDVVPTMRNCGI 297
>SB_14465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 224 GTVRSLSKRANVL*WSKTSLAINSTEAPSFRAAPR*CNV 108
G RS++K+ VL S SL ++ E P R C +
Sbjct: 71 GRTRSVNKQVKVLQRSSMSLELDEFEVPDVVPTMRNCGI 109
>SB_12067| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -3
Query: 128 APR*CNVDTASLDEHPSIHSWYISGSI 48
AP+ C + + +L HPS+ + + GS+
Sbjct: 50 APKKCYIMSITLKRHPSVGVYSLCGSV 76
>SB_38851| Best HMM Match : RVT_1 (HMM E-Value=9.8e-20)
Length = 838
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -3
Query: 128 APR*CNVDTASLDEHPSIHSWYISGSI 48
AP+ C + + +L HPS+ + + GS+
Sbjct: 372 APKKCYIMSITLKRHPSVGVYSLCGSV 398
>SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1333
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/37 (27%), Positives = 17/37 (45%)
Frame = -2
Query: 213 ESLQKGECSVVVQNIAGYQLNRGTKFSCCSTLMQCRH 103
E L G+C V + I G + F C +++C +
Sbjct: 77 EELDCGKCDVTCERIVGVAKINNSLFVCRQVVVKCEN 113
>SB_22182| Best HMM Match : DUF1626 (HMM E-Value=1.7)
Length = 357
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 1 ARGYTEVDVFVSNYTLIDPEIYQLWIE 81
A+ Y E+D VS+Y I+ ++ QL+ E
Sbjct: 206 AKEYYELDGHVSDYVQIEQDVSQLYKE 232
>SB_7921| Best HMM Match : DUF842 (HMM E-Value=3.9e-07)
Length = 251
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 168 RCFGPLQNIRPFGET 212
RCF PLQ+I+ F ET
Sbjct: 56 RCFQPLQDIQKFMET 70
>SB_4318| Best HMM Match : Ligase_CoA (HMM E-Value=0)
Length = 229
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 192 IRPFGETPHGSIKVVRT 242
I PFGETP G K+ R+
Sbjct: 22 INPFGETPDGKGKLFRS 38
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,789,072
Number of Sequences: 59808
Number of extensions: 134569
Number of successful extensions: 344
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 16,821,457
effective HSP length: 59
effective length of database: 13,292,785
effective search space used: 292441270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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