Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_F02
(247 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79752-5|CAB02082.3| 1119|Caenorhabditis elegans Hypothetical pr... 27 2.3
Z77655-3|CAB01134.1| 426|Caenorhabditis elegans Hypothetical pr... 27 2.3
AC024761-4|AAF59466.2| 332|Caenorhabditis elegans Hypothetical ... 27 2.3
Z99942-8|CAC70091.2| 439|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z99942-2|CAB17072.1| 468|Caenorhabditis elegans Hypothetical pr... 26 4.1
AC024797-2|AAF60705.3| 339|Caenorhabditis elegans Hypothetical ... 26 4.1
AF125956-8|AAD14728.2| 678|Caenorhabditis elegans Hypothetical ... 25 5.4
AF125956-7|AAX55694.1| 657|Caenorhabditis elegans Hypothetical ... 25 5.4
AF116529-1|AAD05570.1| 961|Caenorhabditis elegans synthetic mul... 25 5.4
AF000195-1|AAC24266.2| 961|Caenorhabditis elegans Abnormal cell... 25 5.4
L15188-9|AAM22024.1| 618|Caenorhabditis elegans Hypothetical pr... 25 7.1
AC091125-4|AAK27888.1| 732|Caenorhabditis elegans Hypothetical ... 25 7.1
Z99269-1|CAB16467.1| 1461|Caenorhabditis elegans Hypothetical pr... 25 9.4
>Z79752-5|CAB02082.3| 1119|Caenorhabditis elegans Hypothetical
protein D2005.5 protein.
Length = 1119
Score = 26.6 bits (56), Expect = 2.3
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 85 CSSSEAVSTLHQRGAAR-KLGASVELIASDVLDHYRTFALL 204
CSS A+ + QRG AR K SV L ++ T AL+
Sbjct: 854 CSSGSAIQLVQQRGRARAKNSRSVLLSVKSSINETETNALI 894
>Z77655-3|CAB01134.1| 426|Caenorhabditis elegans Hypothetical
protein C56A3.3 protein.
Length = 426
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 69 LVYFRIYKRVITNEYVYFCVPS 4
L+Y++ KRV+ EY CVP+
Sbjct: 319 LIYWKKLKRVLIEEYCCCCVPA 340
>AC024761-4|AAF59466.2| 332|Caenorhabditis elegans Hypothetical
protein Y38C1AA.6 protein.
Length = 332
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 59 KYTSYGLRDAHLVKQCLHCINVEQHEN 139
KYT G RD L+ L C N + ++
Sbjct: 296 KYTELGARDFQLIDTVLECFNEDDEDS 322
>Z99942-8|CAC70091.2| 439|Caenorhabditis elegans Hypothetical
protein H13N06.3b protein.
Length = 439
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = +1
Query: 49 IDPEIYQLWIEGCSSSEAVSTLHQRGAARKLGASVELIASDVLD 180
+DP L +E CS E +H GA G V + + D
Sbjct: 318 VDPNSQYLVLENCSPLEIEVCVHSSGAVWNKGDGVAALVESLHD 361
>Z99942-2|CAB17072.1| 468|Caenorhabditis elegans Hypothetical
protein H13N06.3a protein.
Length = 468
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = +1
Query: 49 IDPEIYQLWIEGCSSSEAVSTLHQRGAARKLGASVELIASDVLD 180
+DP L +E CS E +H GA G V + + D
Sbjct: 347 VDPNSQYLVLENCSPLEIEVCVHSSGAVWNKGDGVAALVESLHD 390
>AC024797-2|AAF60705.3| 339|Caenorhabditis elegans Hypothetical
protein Y48G8AR.2 protein.
Length = 339
Score = 25.8 bits (54), Expect = 4.1
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -2
Query: 192 CSVVVQNIAGYQLNRGTKFSCCSTLM--QCRHCFTR*ASLNP 73
CS Q GY LN GTK CS+ + +C H + ++ NP
Sbjct: 97 CSTC-QCTLGYILNSGTKCKKCSSHICDKCAHSVSSGSAQNP 137
>AF125956-8|AAD14728.2| 678|Caenorhabditis elegans Hypothetical
protein DC2.7a protein.
Length = 678
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +2
Query: 29 SLVITRL*ILKYTSYGLRDAHLVK 100
+L++T+ +LK T +GL H++K
Sbjct: 463 NLMLTKAGVLKITDFGLGTLHIIK 486
>AF125956-7|AAX55694.1| 657|Caenorhabditis elegans Hypothetical
protein DC2.7c protein.
Length = 657
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +2
Query: 29 SLVITRL*ILKYTSYGLRDAHLVK 100
+L++T+ +LK T +GL H++K
Sbjct: 463 NLMLTKAGVLKITDFGLGTLHIIK 486
>AF116529-1|AAD05570.1| 961|Caenorhabditis elegans synthetic
multivulva protein LIN-35 Rb protein.
Length = 961
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 19 VDVFVSNYTLIDPEIYQLWIEGCSSSEAV 105
VD +SNY L+ + Q++ E CS E +
Sbjct: 297 VDDLISNYQLLFSILDQVYTEMCSMKEGI 325
>AF000195-1|AAC24266.2| 961|Caenorhabditis elegans Abnormal cell
lineage protein 35 protein.
Length = 961
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 19 VDVFVSNYTLIDPEIYQLWIEGCSSSEAV 105
VD +SNY L+ + Q++ E CS E +
Sbjct: 297 VDDLISNYQLLFSILDQVYTEMCSMKEGI 325
>L15188-9|AAM22024.1| 618|Caenorhabditis elegans Hypothetical
protein C14B9.2 protein.
Length = 618
Score = 25.0 bits (52), Expect = 7.1
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Frame = +1
Query: 22 DVFVSNYTLIDPEIYQLWIEGCSS-----SEAVSTLHQRGAARKLGASVELIASDVLDHY 186
D F+SN L+ E Y W C +A L +G+ KLG I D+ Y
Sbjct: 158 DDFISNNELVLVEFYAPWCGHCKKLAPEYEKAAQKLKAQGSKVKLGKVDATIEKDLGTKY 217
>AC091125-4|AAK27888.1| 732|Caenorhabditis elegans Hypothetical
protein Y67D2.6 protein.
Length = 732
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = +3
Query: 171 CFGPL---QNIRPFGETPHGSIKVV 236
C+G L + ++ F TPHG+ KVV
Sbjct: 334 CYGALPAREQMKAFDSTPHGTRKVV 358
>Z99269-1|CAB16467.1| 1461|Caenorhabditis elegans Hypothetical
protein W10C6.1 protein.
Length = 1461
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 83 DAHLVKQCLHCINVEQHENLVP 148
D L K CL C+ VE E +P
Sbjct: 80 DLLLSKVCLECVYVEPKEGAIP 101
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,707,954
Number of Sequences: 27780
Number of extensions: 98629
Number of successful extensions: 211
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 12,740,198
effective HSP length: 61
effective length of database: 11,045,618
effective search space used: 220912360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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