Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_E24
         (339 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   175   2e-45
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   175   2e-45
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    40   1e-04
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    26   1.8  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    24   5.5  
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch...    24   7.3  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    24   7.3  
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo...    24   7.3  
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    24   7.3  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    23   9.6  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    23   9.6  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    23   9.6  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  175 bits (426), Expect = 2e-45
 Identities = 78/105 (74%), Positives = 92/105 (87%)
 Frame = +3

Query: 24  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 203
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 204 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGF 338
           QPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEV ++GF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGF 105


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  175 bits (426), Expect = 2e-45
 Identities = 78/105 (74%), Positives = 92/105 (87%)
 Frame = +3

Query: 24  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 203
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 204 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGF 338
           QPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEV ++GF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGF 105


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 39.9 bits (89), Expect = 1e-04
 Identities = 19/47 (40%), Positives = 29/47 (61%)
 Frame = +3

Query: 150 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDG 290
           G+   +G+      V+ K+PNSA+RK  RV+L   G+ VTA++P  G
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIPGIG 92


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = -2

Query: 200 GFNANFFEDDALSMRCTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPRFTHY 21
           GF  +++ +     R   E +RLP     G  + +V    L T +  L++    P + H 
Sbjct: 350 GFKPSYYTNLNRIARYPIENIRLPITLVYGSNDNMVDIETLKTQLPPLSQCIQIPNYEHL 409

Query: 20  D 18
           D
Sbjct: 410 D 410


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +3

Query: 87  WADKEFKKAHMGTRWKANPFGGASHAKGIV 176
           W D EF   H   ++   PF   +H K  V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282


>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 257

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 191 ANFFEDDALSMRCTTEGVRLPSRT 120
           +++FE + + + CT  G R PS+T
Sbjct: 51  SSYFESEKIKIACTVSGPR-PSKT 73


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 93  DKEFKKAHMGTRWKANPFGGASHAKGIVLEKV 188
           D+EF+   +   +K  PF    HA  +V+  V
Sbjct: 143 DREFRIGRLKFNFKPGPFNVKEHALIVVMSSV 174


>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 259 LPFLMSCTRTHLRMAEFGCLAST 191
           L  L+SC +T+   A FGC   T
Sbjct: 133 LSSLLSCMKTYRATALFGCSTDT 155


>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 200 GFNANFFEDDALSMRCTTEGVRLPSR 123
           G + NFFE+D  S+R  ++ +   +R
Sbjct: 11  GLSLNFFEEDGPSLRLNSDSLDFLAR 36


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 219 IRKCV-RVQLIKNGKKVTAFVPRDGCLNHIEE 311
           IR C+ R  L K G  V    PR+ C++ IE+
Sbjct: 460 IRLCLNRPFLSKKGLYVNDMTPRNICIDSIED 491


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 310 SSMWLRQPSRGTNAVTFLPFLMSCTRTHL 224
           S + LRQ  RG   + +LP L+S  +T L
Sbjct: 299 SVLRLRQYLRGNACIDYLPELLSVLKTLL 327


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 88  GPTRNSKKPTWVRDGR 135
           G  R +KK TWVRD +
Sbjct: 308 GKWRQAKKYTWVRDNQ 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,525,381
Number of Sequences: 5004
Number of extensions: 30185
Number of successful extensions: 66
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)