Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_E24
(339 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 171 9e-44
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 170 2e-43
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 149 4e-37
06_02_0197 - 12912818-12913411,12913505-12913732 30 0.53
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192 29 1.2
04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,900... 27 5.0
03_06_0741 + 35893538-35895600,35896274-35896474,35896701-358968... 27 5.0
02_01_0335 + 2386902-2386906,2386976-2387282,2387664-2387777,239... 27 5.0
02_01_0125 + 920128-920392,920491-921839,921921-922084,922340-92... 27 5.0
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310... 27 5.0
05_05_0368 + 24449793-24451199,24451867-24451927,24452256-24452710 26 6.6
04_03_1015 - 21734381-21736534 26 6.6
12_01_0037 - 305940-306520,306627-306759,306830-307020,307228-30... 26 8.7
11_01_0044 + 340486-340854,341855-341911,343100-343974,344065-34... 26 8.7
06_03_0416 + 20568087-20568702,20568767-20570313 26 8.7
06_02_0040 + 10882897-10884744,10885568-10885666 26 8.7
02_02_0322 - 8938101-8938149,8938235-8938458,8938545-8938605,893... 26 8.7
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 171 bits (417), Expect = 9e-44
Identities = 77/111 (69%), Positives = 89/111 (80%)
Frame = +3
Query: 6 RVRAIVMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEK 185
R ++ MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK
Sbjct: 165 RCPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEK 223
Query: 186 VGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGF 338
+G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEV +AGF
Sbjct: 224 IGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGF 274
Score = 170 bits (414), Expect = 2e-43
Identities = 76/105 (72%), Positives = 86/105 (81%)
Frame = +3
Query: 24 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 203
MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 204 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGF 338
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEV +AGF
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGF 104
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 170 bits (414), Expect = 2e-43
Identities = 76/105 (72%), Positives = 86/105 (81%)
Frame = +3
Query: 24 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 203
MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 204 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGF 338
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEV +AGF
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGF 104
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 149 bits (362), Expect = 4e-37
Identities = 72/111 (64%), Positives = 82/111 (73%), Gaps = 1/111 (0%)
Frame = +3
Query: 6 RVRAIVMG-KPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLE 182
RVRA G K G+ RK HRR QRWADK +KK+H G WK PF G+SHAKGIVLE
Sbjct: 65 RVRAWSCGAKTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLE 123
Query: 183 KVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAG 335
K+G+EAKQPNSAI KC RVQL+KNGKK+ AFVP DGCLN I+EN+ V G
Sbjct: 124 KIGIEAKQPNSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174
>06_02_0197 - 12912818-12913411,12913505-12913732
Length = 273
Score = 29.9 bits (64), Expect = 0.53
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -1
Query: 240 VHEHTYEWLNSAAWLQRQLFRGRCP*HEMHHRR 142
V +H WL +A+ LQR +FR H++HH+R
Sbjct: 186 VDDHCGLWLPAASPLQR-VFRNNAAYHDVHHQR 217
>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
Length = 283
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 17 YR-NG*TSGYSHGAQARESSSRAAMGRQGIQKSP 115
YR +G +GY HG + + SSR + R G+ +P
Sbjct: 187 YRVHGMATGYCHGCRCQRCSSRPSRDRDGVAWAP 220
>04_02_0034 -
8999618-9000358,9001439-9001618,9001666-9003621,
9004647-9004786,9004871-9005282,9006399-9006638
Length = 1222
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 75 REQRWADKEFKKAHMGTRWKANPFGG 152
R +RW DK+ K R KA+PF G
Sbjct: 245 RTKRWHDKQIKIKKFKPRDKASPFCG 270
>03_06_0741 +
35893538-35895600,35896274-35896474,35896701-35896814,
35897570-35897649,35897772-35897896,35898008-35898079
Length = 884
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 91 PTRNSKKPTWVRDGRRTPSVVHL 159
PT+++ +PTWV + P+V+ L
Sbjct: 65 PTQHAPEPTWVNPSKPKPTVLSL 87
>02_01_0335 +
2386902-2386906,2386976-2387282,2387664-2387777,
2390252-2390320,2390416-2390715,2390829-2390930,
2391085-2391279,2391377-2391664,2391942-2392128,
2393168-2393272,2393778-2393824,2393982-2394074
Length = 603
Score = 26.6 bits (56), Expect = 5.0
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +3
Query: 81 QRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGK 260
++W E K+ T++ F +HA G+++ G+E +++I K GK
Sbjct: 439 EKWRRAEVPKSDSVTQY----FKNITHANGVIIHPAGLECSL-HASIDALGSCYGDKQGK 493
Query: 261 KVTAFVPR 284
K A+V R
Sbjct: 494 KYRAWVDR 501
>02_01_0125 +
920128-920392,920491-921839,921921-922084,922340-922370,
922534-922565,922730-923060,923210-923713
Length = 891
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 130 HLVPMWAFLNSLSAHRCSRR*FTCLRAVRI 41
H+V WAFL + C F C+ V++
Sbjct: 577 HIVNSWAFLQPFTLQMCQVLQFACVNEVQL 606
>01_01_0413 -
3107668-3107796,3107879-3107971,3108082-3108253,
3108341-3108417,3108514-3108673,3108766-3108875,
3109384-3109443,3109545-3109618,3109748-3109871,
3110795-3110872,3111169-3111275,3112572-3112673,
3112800-3112815
Length = 433
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -2
Query: 149 TEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPRFTHY 21
T ++P H+ + +G S A ++ VLAR ANT + +
Sbjct: 183 TTATKVPGGWHIDGQKRWIGNSTFADVLVVLARNANTKQLNGF 225
>05_05_0368 + 24449793-24451199,24451867-24451927,24452256-24452710
Length = 640
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/37 (27%), Positives = 16/37 (43%)
Frame = +2
Query: 80 AAMGRQGIQKSPHGYEMEGEPLRWCISC*GHRPRKSW 190
A + + +++ G E GEP W + G P W
Sbjct: 290 APVSEEQLEELALGLEASGEPFLWAVRADGWSPPAGW 326
>04_03_1015 - 21734381-21736534
Length = 717
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +3
Query: 210 NSAIRKCVRVQLIKNGKKVTAFVPRDG 290
+SA+ C + L+ +GK++ A++ R+G
Sbjct: 492 SSALAACANIFLLNHGKQIHAYMIRNG 518
>12_01_0037 -
305940-306520,306627-306759,306830-307020,307228-307508,
307668-307790,308240-308339,308451-308544
Length = 500
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -3
Query: 232 THLRMAEFGCLASTPTFSRTMPLA*DAPPKGFAFHLVPMWA 110
T R+ + LAS T +T P + +P + A HLVP WA
Sbjct: 112 TPRRLLQARELASNQT--QTHPKSQSSPVQSSASHLVPRWA 150
>11_01_0044 +
340486-340854,341855-341911,343100-343974,344065-344398,
345553-345645,345913-346062
Length = 625
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 135 ANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR 236
A +GGA++ +++ GVE KQ S I + VR
Sbjct: 564 AGTYGGAAYRDLEIVKGTGVEGKQKGSYILQHVR 597
>06_03_0416 + 20568087-20568702,20568767-20570313
Length = 720
Score = 25.8 bits (54), Expect = 8.7
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = -1
Query: 237 HEHTYEWLNSAAWLQRQLF 181
H Y+W+N +AW+ +F
Sbjct: 250 HMRLYQWINYSAWVPSDIF 268
>06_02_0040 + 10882897-10884744,10885568-10885666
Length = 648
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 32 TSGYSHGAQARESSSRAAMGRQGIQKSPHGYEME 133
TSG+ H ++ A G++ I PH Y M+
Sbjct: 337 TSGFRHFLISQSVDPSGAKGKELITSGPHPYSMK 370
>02_02_0322 -
8938101-8938149,8938235-8938458,8938545-8938605,
8938724-8940761,8940797-8940908,8942037-8942047,
8942293-8942443
Length = 881
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = +2
Query: 35 SGYSHGAQARESSSRAAMGRQGIQKSPHGYEMEGEPLR 148
S SHG+Q S+S A QGI S E E P R
Sbjct: 571 SAASHGSQDLPSNSSEAEKMQGISSSCSISEDENSPAR 608
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,739,630
Number of Sequences: 37544
Number of extensions: 232342
Number of successful extensions: 652
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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