Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_E23
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    27   1.4  
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   1.8  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   3.2  
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy...    25   3.2  
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   3.2  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    25   4.2  
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo...    24   7.3  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    24   7.3  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    24   7.3  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    24   9.7  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    24   9.7  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    24   9.7  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    24   9.7  

>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 13/45 (28%), Positives = 17/45 (37%)
 Frame = -2

Query: 378 NSSEFHRDRLVLLSSGRLVFLRISALGLLGFPVTLARSCCNIADC 244
           N    H  RL    +      RI+A   L  P      CC++ DC
Sbjct: 709 NDLPMHMQRLFFCLANPTAEQRITAQEALNLPFVQEIECCSVDDC 753


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 212 YKWNMLGICKRVENCRTADKDNEHPTCCLVTHP*SRTR 99
           YK N   I KRV+N     +  +H  C LV    ++TR
Sbjct: 52  YKKNSSAIPKRVDNILLRSQKPKHIECLLVDSKITKTR 89


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = +3

Query: 123 NKAAGWVFVVLISSSTVLHTFAYPQH---VPLISQAPSSVRTHNSPQYYSNSLPASQESQ 293
           +K  GW+   + ++      F   Q+   V  +S+    VRT  SP    ++   +Q++ 
Sbjct: 133 DKHTGWILKPVFAARLNAKPFFKEQYDLLVVKLSKLYDFVRTRGSPIKGDSAAGGTQQNF 192

Query: 294 VAQERKFAEKPNALKKVAL 350
           V Q  K+   PN + ++ +
Sbjct: 193 VRQTTKYWVHPNNVTELKI 211


>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +3

Query: 261 SNSLPASQESQVAQERKFAEKPNALK-KVALDDLDEIQTNSI 383
           SNS  ASQ S+ A ++K  EK ++ K K+A    D++ T+++
Sbjct: 238 SNST-ASQASENASDKKTKEKKSSGKQKIASKKKDQLTTDNV 278


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = +3

Query: 204 PLISQAPSSVRTHNSPQYYSNSLPASQESQVAQERKFAEKPNALKKVALDDLDEIQTNSI 383
           P+  + P S+    S   Y++S   S  +  + E K  +         LD+ D+   NS+
Sbjct: 257 PIPGRRPLSI----SSDLYNDSNSGSHSNDDSDETKLKQSSTESSSELLDEKDKFDKNSL 312

Query: 384 SD 389
           +D
Sbjct: 313 ND 314


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 201 VPLISQAPSSVRTHNSPQYYSNSLPASQESQ 293
           VP+  Q PSS  ++++  ++  S P S  S+
Sbjct: 401 VPISGQQPSSPASNSNANFFFGSSPQSMSSE 431


>SPBC530.01 |gyp1||GTPase activating protein Gyp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 368 NFIEIV*CYFLQGVWFFCEFPLLGYLAFL*RW 273
           N I +   Y  +GV  F EF L    AFL +W
Sbjct: 431 NIIRMWDTYMAEGVQGFSEFHLYVCAAFLVKW 462


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 162 SSTVLHTFAYPQHVPLISQAPSSVRTHNSPQYYSN 266
           +ST  +    P + P  S  PSS R   SP  YSN
Sbjct: 295 ASTNYNASRPPSNHPHSSNYPSSSRRKPSPDRYSN 329


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 145 SLSLSAVRQFSTRLHIPNMFHLYHRHPAVSERITVRNITATPCQR 279
           S   S  R  S++L+ P+    YH H ++ E ++V +  A+P  R
Sbjct: 40  SADSSRRRSTSSQLNQPSN---YHMHSSLHEEVSVGSSIASPSSR 81


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 213 SQAPSSVRTHNSPQYYSNSLPASQE 287
           +Q+ SS +  NSP    N+LPAS +
Sbjct: 792 NQSVSSTQGSNSPLELINNLPASDD 816


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 14/55 (25%), Positives = 21/55 (38%)
 Frame = +3

Query: 162 SSTVLHTFAYPQHVPLISQAPSSVRTHNSPQYYSNSLPASQESQVAQERKFAEKP 326
           SS  LHT   P     +S          +P   S + PAS  S++   +    +P
Sbjct: 174 SSLSLHTHFNPSSSSTVSSDSLESSQQKAPSSSSTATPASAASEIISNKDPVVEP 228


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 267 SLPASQESQVAQERKFAEKPNALKKVALDDLDEIQTNSISDG 392
           S PA+Q++   +     EKP++L  V   +++E      ++G
Sbjct: 395 STPAAQQTSEVEANNHQEKPSSLPAVEQINVNEENNTPETEG 436


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
            Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 200  MLGICKRVENCRTADKD 150
            +LG CK++EN  T DK+
Sbjct: 1061 LLGECKQLENSITKDKE 1077


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,585,344
Number of Sequences: 5004
Number of extensions: 31473
Number of successful extensions: 97
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)