Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_E23
         (394 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC101718-1|AAI01719.1|  216|Homo sapiens chromosome 4 open readi...    29   7.2  
BC101716-1|AAI01717.1|  216|Homo sapiens chromosome 4 open readi...    29   7.2  
BC068025-1|AAH68025.1|  216|Homo sapiens chromosome 4 open readi...    29   7.2  
BC050697-1|AAH50697.1|  216|Homo sapiens chromosome 4 open readi...    29   7.2  
AK000287-1|BAA91056.1|  216|Homo sapiens protein ( Homo sapiens ...    29   7.2  
U96288-1|AAB67790.1|  127|Homo sapiens Ig heavy chain VH2 region...    28   9.5  
AY946008-1|AAY23347.1| 1841|Homo sapiens peripheral clock protei...    28   9.5  
AY946007-1|AAY23346.1|  522|Homo sapiens peripheral clock protei...    28   9.5  

>BC101718-1|AAI01719.1|  216|Homo sapiens chromosome 4 open reading
           frame 30 protein.
          Length = 216

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -1

Query: 190 YANVWRTVE---LLIRTTNTQPAALLHILNLVPESISLKHCTHCLPR 59
           Y+  W+ +     L       P+  +HIL  +   + L HC+HC+P+
Sbjct: 62  YSTTWKPLNPNSWLYHAKLLDPSTPVHILREI--GLRLSHCSHCVPK 106


>BC101716-1|AAI01717.1|  216|Homo sapiens chromosome 4 open reading
           frame 30 protein.
          Length = 216

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -1

Query: 190 YANVWRTVE---LLIRTTNTQPAALLHILNLVPESISLKHCTHCLPR 59
           Y+  W+ +     L       P+  +HIL  +   + L HC+HC+P+
Sbjct: 62  YSTTWKPLNPNSWLYHAKLLDPSTPVHILREI--GLRLSHCSHCVPK 106


>BC068025-1|AAH68025.1|  216|Homo sapiens chromosome 4 open reading
           frame 30 protein.
          Length = 216

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -1

Query: 190 YANVWRTVE---LLIRTTNTQPAALLHILNLVPESISLKHCTHCLPR 59
           Y+  W+ +     L       P+  +HIL  +   + L HC+HC+P+
Sbjct: 62  YSTTWKPLNPNSWLYHAKLLDPSTPVHILREI--GLRLSHCSHCVPK 106


>BC050697-1|AAH50697.1|  216|Homo sapiens chromosome 4 open reading
           frame 30 protein.
          Length = 216

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -1

Query: 190 YANVWRTVE---LLIRTTNTQPAALLHILNLVPESISLKHCTHCLPR 59
           Y+  W+ +     L       P+  +HIL  +   + L HC+HC+P+
Sbjct: 62  YSTTWKPLNPNSWLYHAKLLDPSTPVHILREI--GLRLSHCSHCVPK 106


>AK000287-1|BAA91056.1|  216|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20280 fis, clone HEP03525. ).
          Length = 216

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -1

Query: 190 YANVWRTVE---LLIRTTNTQPAALLHILNLVPESISLKHCTHCLPR 59
           Y+  W+ +     L       P+  +HIL  +   + L HC+HC+P+
Sbjct: 62  YSTTWKPLNPNSWLYHAKLLDPSTPVHILREI--GLRLSHCSHCVPK 106


>U96288-1|AAB67790.1|  127|Homo sapiens Ig heavy chain VH2 region
           protein.
          Length = 127

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -1

Query: 190 YANVWRTVELLIRTTNTQPAALLHILNLVPESISLKHCTHCLPRGI 53
           Y+   RT   ++R T+T  A LL + N+  E  +  +C H L RG+
Sbjct: 61  YSPSLRTRLTIMRDTSTNQAVLL-MTNMNSEDTATYYCAHRLNRGL 105


>AY946008-1|AAY23347.1| 1841|Homo sapiens peripheral clock protein 2
           protein.
          Length = 1841

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 140 GVRCPYQQFDSSPHVCISPTCSTYITGT 223
           G  CP   + SS  + +S TCS Y +G+
Sbjct: 256 GHLCPRNSYSSSSELSLSSTCSEYSSGS 283


>AY946007-1|AAY23346.1|  522|Homo sapiens peripheral clock protein 1
           protein.
          Length = 522

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 140 GVRCPYQQFDSSPHVCISPTCSTYITGT 223
           G  CP   + SS  + +S TCS Y +G+
Sbjct: 256 GHLCPRNSYSSSSELSLSSTCSEYSSGS 283


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,860,038
Number of Sequences: 237096
Number of extensions: 1141157
Number of successful extensions: 4062
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4062
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2756025120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)