Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_E23
         (394 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical p...    29   1.6  
AC017117-1|AAF16618.1|  338|Caenorhabditis elegans Hypothetical ...    27   4.8  
Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical pr...    26   8.4  
U40953-6|AAB52651.1|  809|Caenorhabditis elegans Hypothetical pr...    26   8.4  
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ...    26   8.4  

>Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical
           protein Y49E10.29 protein.
          Length = 559

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +3

Query: 195 QHVPLISQAPSSVRTHNSPQYYSNSLPASQESQVAQERKFAEKPNALKKVALDDLDEIQ 371
           Q VP+I QAP +       Q  +++ PA Q   + Q+ + A+K  A    A   +  +Q
Sbjct: 18  QQVPVIQQAPPNSPAQQQQQAQAHAPPA-QAKPIVQQTQPAQKQQAQAPPAAQQIPVVQ 75


>AC017117-1|AAF16618.1|  338|Caenorhabditis elegans Hypothetical
           protein F43C11.8 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 146 RCPYQQFDSSPHVCISPTCST 208
           +C   Q++ +  VCI PTCS+
Sbjct: 105 KCASHQYNFAEFVCIEPTCSS 125


>Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical
           protein C05A9.1 protein.
          Length = 1283

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 329 VWFFCEFPLLGYLAFL*RWQGVAVILRTVMRS 234
           V+FFC FPLL + +    W  V   ++ ++ S
Sbjct: 14  VFFFCSFPLLPFSSNT-NWSNVCKFIKVIVGS 44


>U40953-6|AAB52651.1|  809|Caenorhabditis elegans Hypothetical
           protein F53B1.8 protein.
          Length = 809

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -3

Query: 329 VWFFCEFPLLGYLAFL*RWQGVAVILRTVMRSDTAGCL*YKWNMLGI 189
           +WF   F  L +  F      ++VILRTV  ++ +  L  +W M+ +
Sbjct: 675 LWFLLLFAPLSFCTFAIAVPIISVILRTVDYNERSFALGIQWIMIRV 721


>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
           protein Y18D10A.1 protein.
          Length = 1634

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +3

Query: 231 VRTHNSPQYYSNSLPASQESQVAQERKFAEKPNALKKVALDDLDEIQTNSISD 389
           VR   + Q + NSL  S  S  A E + +E P  L  V  +    I   ++SD
Sbjct: 217 VRLFFNSQPWKNSLSTSDPSISATEAEASEDPEHLDDVITEPAPPIGEQTLSD 269


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,849,427
Number of Sequences: 27780
Number of extensions: 179335
Number of successful extensions: 663
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)