Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_E23
         (394 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   0.95 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   1.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    20   8.8  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 0.95
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +1

Query: 163 VRQFSTRLHIPNMFHLYHRHPAVSERITVRNITATPCQRHRK 288
           VR+ S R +   ++HL + H   +    +   +   C+RH+K
Sbjct: 261 VRRDSRRKNYGGVYHLDNHHVHHANHHAILGHSGFLCERHQK 302


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 197 LGICKRVENCRTADKDNEHPTCCLVTHP 114
           LG+ +  E     D   EHPTC L   P
Sbjct: 163 LGLHRANEPVVLDDSKEEHPTCALDLTP 190


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +3

Query: 162  SSTVLHTFAYPQH 200
            ++T+LH+F Y +H
Sbjct: 1733 NNTLLHSFMYHEH 1745


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +3

Query: 162  SSTVLHTFAYPQH 200
            ++T+LH+F Y +H
Sbjct: 1729 NNTLLHSFMYHEH 1741


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 178 TRLHIPNMFHLYHRHPAVS 234
           T+  +PN   L  RHP V+
Sbjct: 131 TKRPLPNESQLIKRHPIVT 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,039
Number of Sequences: 438
Number of extensions: 2307
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)