Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_E22
         (276 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    26   1.1  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    25   2.6  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    23   6.1  
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ...    23   6.1  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    23   8.0  

>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +3

Query: 228 FTRVVTVPVGFGIKTI 275
           F +++T+P+GFGI T+
Sbjct: 287 FPQLITIPMGFGITTL 302


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 87  KNIPANNDFLLCIFVKCQSLLSVFAVS 7
           KN+P NN +L C  ++  S    F +S
Sbjct: 64  KNLPGNNIYLCCGRLQMSSQYKAFLIS 90


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 210 VVNKYKYRDYMPTDARLREIT 148
           V  + K   ++P D+RLREIT
Sbjct: 468 VRERLKQPKFIPEDSRLREIT 488


>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 364

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 30  KIDISQIYTIKNRYLLGYF 86
           KIDIS  Y + N Y + Y+
Sbjct: 66  KIDISSDYQLLNEYKVAYY 84


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 190 SRLYAN*CEIKRNHVHSIS 134
           S LYA+ C I RN V SIS
Sbjct: 560 SVLYADRCIISRNVVESIS 578


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,007,247
Number of Sequences: 5004
Number of extensions: 16876
Number of successful extensions: 35
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)