Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_E22
         (276 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0789 + 21211110-21211296,21211636-21211937,21212034-21212702     26   3.7  
06_02_0038 + 10865068-10865150,10865249-10865335,10865835-108659...    26   5.0  

>08_02_0789 + 21211110-21211296,21211636-21211937,21212034-21212702
          Length = 385

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 141 QFHS*VMIDS*LKKNFIIKNIPANNDFLLC-IFVKCQSL 28
           +F    + D  L K  I KNIP N+ + +C IF K  S+
Sbjct: 140 EFRLPTLTDPSLPKKPIDKNIPLNDSWTICRIFKKTSSM 178


>06_02_0038 +
           10865068-10865150,10865249-10865335,10865835-10865936,
           10867000-10870078
          Length = 1116

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -1

Query: 144 TQFHS*VMIDS*LKKNFIIKNIPANNDFLLCIFVKCQSLLSVFAVSSC 1
           T F   ++I   L  N  + ++  +N   LC+ V    L+  +A  SC
Sbjct: 442 TAFAGSLVIIIMLLSNTAVDHVVKSNALRLCVLVSLFGLMGAYAAGSC 489


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,619,631
Number of Sequences: 37544
Number of extensions: 84106
Number of successful extensions: 112
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 268461864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)