Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_E21
(438 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein... 49 3e-07
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 45 6e-06
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 36 0.002
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ... 33 0.019
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 27 1.3
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce... 26 2.2
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po... 26 2.2
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 26 2.2
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 26 2.9
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 26 2.9
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 26 2.9
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 26 2.9
SPCC1840.09 |||NAD dependent epimerase/dehydratase family protei... 26 2.9
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 5.1
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M... 25 5.1
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 25 6.7
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 6.7
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom... 25 6.7
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc... 24 8.9
>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
Stg1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 49.2 bits (112), Expect = 3e-07
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Frame = +1
Query: 109 EVAHETLEWIRKLTGEPANTDGSADNLYEILKDGTLLCKLVNTIQEGSVKKVNQSTMAFK 288
++ E EWI + N +L + L+ G +LC++ +++ +S M F
Sbjct: 4 QLEKEAREWIEETLHTKLNAQL---DLLDQLQSGVILCRICKEALGANIR-YKESNMPFV 59
Query: 289 CMENINACVE-AVKKLGVPPQETFQTID*WERQNLYSVVTCLQSLGRKAS 435
MENI+A + A + + VP Q+ FQT D +ER+N V+ + S R A+
Sbjct: 60 QMENISAFINYAQQVVHVPSQDMFQTSDLFERRNDEQVLRSIHSFSRYAA 109
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 44.8 bits (101), Expect = 6e-06
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Frame = +1
Query: 121 ETLEWIRKLTGEPANTD-GSADNLYEILKDGTLLCKLVNTIQEGSVKKVNQST-MAFKCM 294
E +WI + G TD G + L++G +L LV Q + K+ S + F+
Sbjct: 46 EAKKWIEECLG----TDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHS 101
Query: 295 ENINACVEAVKKLGVPPQETFQTID*WERQNLYSVVTCLQSL 420
+NIN ++ + +G+P F+ D +E +NL V+ C+ +L
Sbjct: 102 DNINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHAL 143
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 36.3 bits (80), Expect = 0.002
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 13/112 (11%)
Frame = +1
Query: 40 EYRAGKAGINAEAQARIHSKYNDEVAHETLEWIRK-LTGEP-----ANTDGSADNLYEIL 201
E + G+ I + + H+ N+E E ++ I L G+P + ++
Sbjct: 91 EVKKGRITIKGSSSSVSHT-INEEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQC 149
Query: 202 KDGTLLCKLVN-----TIQEGSVKKV--NQSTMAFKCMENINACVEAVKKLG 336
KDG +L KL+N TI E + K N+ FKC+EN N + + K +G
Sbjct: 150 KDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMG 201
>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 621
Score = 33.1 bits (72), Expect = 0.019
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 175 SADNLYEILKDGTLLCKLVNTIQEGSVKKVNQST-MAFKCMENINACVEAVKKLGVP 342
S +L + L DG LL +L+ I + ++ + N++ M +EN+N +E +K G+P
Sbjct: 29 SVFDLRKDLSDGILLIQLLEIIGDENLGRYNRNPRMRVHRLENVNKALEYIKSKGMP 85
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 27.1 bits (57), Expect = 1.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 362 VWKVSWGGTPNFLTASTHALMFSM 291
+WK+ G PN T H L+FS+
Sbjct: 951 IWKLVLSGLPNCKTVFEHLLLFSL 974
>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 544
Score = 26.2 bits (55), Expect = 2.2
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Frame = -1
Query: 198 YLVQVVGRPVCVSRFAG------QFPDPFESFMRYFIVVFAVDSRLCFGVDSSFASAIFG 37
YLVQV G P FAG Q +P Y I + AV + + G SS + +
Sbjct: 132 YLVQVTGPPSVAYSFAGMILTLVQLHNPNFETQNYQIFLLAVAAMIAQGFISSMPTKVLA 191
Query: 36 HF 31
F
Sbjct: 192 VF 193
>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 26.2 bits (55), Expect = 2.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 18 VVNTKNGRISRWQSWNQRRSTGENPQQI 101
+++T+ + W+SW Q STG NP +I
Sbjct: 22 IIHTRPHKKCDWRSWEQWESTG-NPVRI 48
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 26.2 bits (55), Expect = 2.2
Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Frame = +1
Query: 118 HETLEWIRKLTGEPANTDGSADNLYEILKDGTLLCKLVNTIQEGSVKKVN-QSTMAFKCM 294
HE +W+ + T N + D+ + L +G +LC+L + ++ +
Sbjct: 68 HEAKKWLEEETN---NEYQNLDDFVDALVNGKVLCQLAFKYYPKLASNWKPRYQISERNT 124
Query: 295 ENINACVEAVKKLGVPPQETFQTID*WERQNLYSVVTCLQSL 420
+NA + +G+ F+T D R N+ V+ CL +L
Sbjct: 125 VYLNAFFHFLDFIGMFTPFRFETKDLVRRFNIPKVIYCLHAL 166
Score = 24.6 bits (51), Expect = 6.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 140 LIHSRVSCATSSLYLLWILAC 78
+IHS + C+ SSLY L + C
Sbjct: 674 VIHSSLPCSKSSLYQLSLSLC 694
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 2.9
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = -2
Query: 227 SLQSRVPSFNISYKLSAD--PSVLAGSPVSFLIHSRVSCATSSLYLLWILACASALIPAL 54
S S + NIS+ + P+V GSP +H +V+ A S L SA + A+
Sbjct: 46 SRDSNSQTHNISFNIGTPTAPTVSTGSPAVASLHDQVAAAISPRNR--SLTSTSA-VEAV 102
Query: 53 PARYSA 36
PA SA
Sbjct: 103 PASISA 108
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 2.9
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = -2
Query: 236 VFTSLQSRVPSFNISYKLSADPSVLAGSPVSFLIHSRVSCATSSLYLLWILACASALIPA 57
+++SL S + S N + S + S +S L S + +LLW+L CA LI
Sbjct: 533 IYSSLYSSLNSSNSTVSFSGIFDRVEKSVISELNFSFL------FFLLWLLICAFGLIGV 586
Query: 56 LPARYSAIF 30
L + ++F
Sbjct: 587 LSSWLKSLF 595
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 25.8 bits (54), Expect = 2.9
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 184 NLYEILKDGTLLCKLVNTIQEGSVKKVNQSTMAFKCMENINACVEAVKKLG 336
NLYE D + L K+ + ++ Q+ KC+ +N +E VKK G
Sbjct: 78 NLYESTHDISELHKITPILASKFLELEEQN----KCLNTVNKYMEVVKKYG 124
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.8 bits (54), Expect = 2.9
Identities = 13/45 (28%), Positives = 29/45 (64%)
Frame = +1
Query: 172 GSADNLYEILKDGTLLCKLVNTIQEGSVKKVNQSTMAFKCMENIN 306
GS++N+ EIL D + L +L++ +++ S+ + + + CM +I+
Sbjct: 1784 GSSNNI-EILDDESNLLRLMSLVEKYSLPFLRRVALVLYCMFDIS 1827
>SPCC1840.09 |||NAD dependent epimerase/dehydratase family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 25.8 bits (54), Expect = 2.9
Identities = 11/52 (21%), Positives = 24/52 (46%)
Frame = +1
Query: 118 HETLEWIRKLTGEPANTDGSADNLYEILKDGTLLCKLVNTIQEGSVKKVNQS 273
H W+ + E + ++L +L+D + + V + E + KK+ Q+
Sbjct: 39 HNKEPWMDDVEWETLDAQKDPNSLLPVLRDASAVVNSVGILMENNYKKILQN 90
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.0 bits (52), Expect = 5.1
Identities = 18/74 (24%), Positives = 28/74 (37%)
Frame = -1
Query: 432 RLPAQRLQASDDRVKVLSLPLIDRLESFLGRHAQLFNRFHTRIDVLHALESHRRXXXXXX 253
RL + + S+D K L+D LES +G + L + T L + H
Sbjct: 916 RLLQKVKEHSEDNTKEKHQQLLDLLESLVGNNDNLIDSIKTPHTELQKITDHVLKGTTSL 975
Query: 252 XXXLNRVHELAKQS 211
N + L +S
Sbjct: 976 ANHTNELLGLGDES 989
>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 5.1
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +1
Query: 31 KMAEYRAGKA-GINAEAQARIH----SKYNDEVAHETLEWIRKLTGEPANT 168
K+ E G+ + ++ ++IH +Y+DE ET I +L +P NT
Sbjct: 85 KIDECTTGRVYALKFKSSSQIHFYWMQEYSDEKDKETASLINQLIADPVNT 135
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 24.6 bits (51), Expect = 6.7
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 53 AKLESTPKHRRESTANTTMK*RMKLSNGSGN*PANRLTQTGRPT 184
AK STP R+ S + T ++ L +GN +N TQ R T
Sbjct: 39 AKKASTPDLRQTSLTSMTASEQIPLVTNNGNGNSNVSTQYQRLT 82
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 24.6 bits (51), Expect = 6.7
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +1
Query: 103 NDEVAHETLEWIRKLTGEPANTDGSADNLYEILKDGTL 216
ND++ + W+ L N + A +Y++ K G L
Sbjct: 1584 NDQIIIVFVSWVHLLRNSATNDETKAAFVYQLHKQGIL 1621
>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 24.6 bits (51), Expect = 6.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 280 AFKCMENINACVEAVKKL 333
A K +E +++C E VKKL
Sbjct: 95 AIKLLERLDSCTETVKKL 112
>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 479
Score = 24.2 bits (50), Expect = 8.9
Identities = 7/20 (35%), Positives = 16/20 (80%)
Frame = -2
Query: 176 DPSVLAGSPVSFLIHSRVSC 117
D ++L+G+PV +++ R++C
Sbjct: 42 DKALLSGTPVERVVNDRINC 61
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.130 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,901,653
Number of Sequences: 5004
Number of extensions: 37677
Number of successful extensions: 128
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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