Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_E20
(335 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S... 120 6e-29
SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac... 117 6e-28
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 25 3.1
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi... 24 5.4
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 24 7.1
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 24 7.1
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 24 7.1
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 23 9.4
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 23 9.4
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 23 9.4
>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 91
Score = 120 bits (289), Expect = 6e-29
Identities = 55/92 (59%), Positives = 64/92 (69%)
Frame = +1
Query: 22 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 201
MTKGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W KA
Sbjct: 1 MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60
Query: 202 XXXMRHLKIVRRRFRNGFKEGKLTPKKAVASS 297
M +LK V R F+NGF+ GK P AVA+S
Sbjct: 61 TGRMSYLKKVHRSFKNGFRSGK--PAAAVAAS 90
>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 117 bits (281), Expect = 6e-28
Identities = 51/84 (60%), Positives = 59/84 (70%)
Frame = +1
Query: 22 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 201
MTKGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W KA
Sbjct: 1 MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60
Query: 202 XXXMRHLKIVRRRFRNGFKEGKLT 273
M +LK V R F+NGF+ GK T
Sbjct: 61 TGRMSYLKKVHRSFKNGFRAGKPT 84
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 25.0 bits (52), Expect = 3.1
Identities = 10/28 (35%), Positives = 11/28 (39%)
Frame = +1
Query: 58 NKTHTLCRRCGRSSYHIQKSKCAQCGYP 141
N H C C Y + S C QC P
Sbjct: 654 NCGHAFCSNCMEPFYEHKTSTCPQCETP 681
>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 24.2 bits (50), Expect = 5.4
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +2
Query: 11 FLTR*RRVPQVLVSVGIRHIHYAEDVVD 94
F + +VP + VS G++H+++A D
Sbjct: 352 FFQKTLKVPVLCVSPGLKHLYHAAQAYD 379
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 23.8 bits (49), Expect = 7.1
Identities = 10/31 (32%), Positives = 13/31 (41%)
Frame = +1
Query: 49 KRRNKTHTLCRRCGRSSYHIQKSKCAQCGYP 141
KR N L R +Q ++C CG P
Sbjct: 1632 KRTNDWKELSVRLREDELRVQTARCMDCGTP 1662
>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 596
Score = 23.8 bits (49), Expect = 7.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 28 KGTSSFGKRRNKTHTLCRRCGRSS 99
KGTS R+ T+ L R C +SS
Sbjct: 214 KGTSGGQATRHLTYALSRTCSQSS 237
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 23.8 bits (49), Expect = 7.1
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -2
Query: 97 MIYHIFCIVYVS 62
MIY +FC+ Y+S
Sbjct: 683 MIYFVFCVFYIS 694
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 23.4 bits (48), Expect = 9.4
Identities = 7/25 (28%), Positives = 17/25 (68%)
Frame = -3
Query: 285 GFFRCKFSFLETIAETPSDNFQVTH 211
GF RC+ +F+ ++ T ++ +V++
Sbjct: 1454 GFLRCQINFVRSVMTTKNEWIEVSN 1478
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 23.4 bits (48), Expect = 9.4
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -1
Query: 254 KPLRKR-LLTIFK*RMRPVPVVFLRLALTD 168
K + KR LL +F+ RP+P++ L+L L D
Sbjct: 881 KTINKRELLKVFQ---RPIPLLLLQLFLVD 907
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 23.4 bits (48), Expect = 9.4
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = +3
Query: 228 CQKAFPQWFQGRKTY 272
C + P WF+ RK Y
Sbjct: 260 CSRQKPTWFKARKAY 274
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,356,564
Number of Sequences: 5004
Number of extensions: 24401
Number of successful extensions: 59
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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