Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_E19
         (338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   0.59 
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    25   4.2  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    24   5.5  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    24   5.5  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 27.5 bits (58), Expect = 0.59
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 188  MLPTDLEPAVSFCTHLLYKSAGIQADTYKMVS 283
            M+ +D EP VS C  LL  +     D + MVS
Sbjct: 1281 MVESDYEPDVSLCPELLSLAIDFPGDPFVMVS 1312


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 129 KAKSSATMTARAISENLKHVCCLRTWS 209
           K K+S     R   EN+ H+CC  T S
Sbjct: 45  KDKNSTLKIDRLFEENVPHLCCQVTAS 71


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +2

Query: 113 ASPSSQSKVLCYYDSKSYIRESQARMLPTDLEPAVS 220
           A+P+S+ +VL Y  S+++   S    LP+   P+++
Sbjct: 556 ATPASRERVLPYTRSQAFHSTSLPPSLPSGHSPSIA 591


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 101  TNHPASPSSQSKVLCYYDSKSYIRESQARMLPTDLEPAVS 220
            TN+   PSS   ++   DS  + +ES+ + L   +   VS
Sbjct: 1063 TNNTLEPSSVEAIVSSKDSDKHAKESKGKSLAPLISSRVS 1102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,300,918
Number of Sequences: 5004
Number of extensions: 21408
Number of successful extensions: 66
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)