Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_E19
(338 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0197 + 19143582-19143618,19143814-19144523 30 0.53
05_01_0425 - 3347604-3347708,3348394-3348466,3349917-3350581,335... 27 5.0
01_06_0630 - 30723903-30724496 27 5.0
04_04_0236 + 23825368-23825763,23826229-23828667 26 6.6
03_02_0517 + 9054816-9055655 26 6.6
12_02_0451 - 19179592-19179648,19179745-19179879,19180214-191802... 26 8.7
11_06_0120 - 20324794-20325204,20325416-20325545,20326172-203262... 26 8.7
11_01_0259 + 1981554-1982249 26 8.7
01_06_1034 + 33962813-33963802 26 8.7
01_06_0517 + 29981537-29981927,29982024-29982231,29982373-299825... 26 8.7
>01_05_0197 + 19143582-19143618,19143814-19144523
Length = 248
Score = 29.9 bits (64), Expect = 0.53
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Frame = +2
Query: 137 VLCYYDSKSYIRES-------QARMLPTDLEPAVSFCTHLLYKSAGIQADTYKM-VSLN* 292
+ +YD KS IR+ + ++ D+E + F HL+ +S G+ D +K+ +
Sbjct: 132 ITSHYDGKSGIRKHILEMTHMENQLRSMDMEISDGFLVHLIMRSLGLNYDPFKINYNTQK 191
Query: 293 EIWTI 307
E WTI
Sbjct: 192 EKWTI 196
>05_01_0425 -
3347604-3347708,3348394-3348466,3349917-3350581,
3350609-3351088,3351253-3351534
Length = 534
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Frame = +3
Query: 54 RPWSPSPGYW------R*RLRLPTTQHHLVAKAKSSA 146
R WSPS G W R RLPTT+ H + A
Sbjct: 433 RAWSPSVGDWLADRPRTLRFRLPTTKDHTTERISGLA 469
>01_06_0630 - 30723903-30724496
Length = 197
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3
Query: 183 HVCCLRTWSLLFRSAPIC 236
HVCCL W S P+C
Sbjct: 146 HVCCLDAWLRRNASCPVC 163
>04_04_0236 + 23825368-23825763,23826229-23828667
Length = 944
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +2
Query: 104 NHPASPSSQSKVLCYYDSKSYIRESQARMLPTDLEPAV 217
NHP +P ++C+ D + RE + T L P +
Sbjct: 276 NHPCNPEMVRFMMCFKDLPDWQREHRPFNAKTRLNPKI 313
>03_02_0517 + 9054816-9055655
Length = 279
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 171 ENLKHVCCLRTWSLLFRSAPICCTNLPAS 257
+++ H C+ W L S P+C LPA+
Sbjct: 154 KHVYHQDCILPWLSLRNSCPVCRRELPAA 182
>12_02_0451 -
19179592-19179648,19179745-19179879,19180214-19180247,
19180347-19180423,19180523-19180598,19180792-19180925,
19181772-19181878,19182505-19182808,19182913-19183218
Length = 409
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -2
Query: 247 RFVQQMGAERNSRLQVRRQHTCLRFSDIALAVIVAEDFALATR*CWVVGSRKRYRQ 80
RF++ A RN+ +T + SDI + V + T C + R++YRQ
Sbjct: 336 RFLRAAQASRNNH--TLEHYTSYKSSDIQICVCALRELQHNTSNCPLNAIREKYRQ 389
>11_06_0120 -
20324794-20325204,20325416-20325545,20326172-20326255,
20326584-20326823,20327418-20327498,20327761-20328113
Length = 432
Score = 25.8 bits (54), Expect = 8.7
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -1
Query: 278 PFYMCQLGCRQICTADGCRTKQQAPSP*AAYVLEI-L*YSSCCH 150
P ++C + CR IC CRTK+ AAY + L Y S H
Sbjct: 265 PDWICPV-CRGICNCSICRTKKGWFPTGAAYRKVVSLGYKSVAH 307
>11_01_0259 + 1981554-1982249
Length = 231
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 183 HVCCLRTWSLLFRSAPICCTNLPA 254
H C+ +W L+ R P+C LPA
Sbjct: 169 HEQCIFSWLLINRHCPLCRFPLPA 192
>01_06_1034 + 33962813-33963802
Length = 329
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 171 ENLKHVCCLRTWSLLFRSAPICCTNLPAS 257
++L H C+ W + S P+C LP+S
Sbjct: 211 KHLYHAECIIPWLVQHNSCPVCRHPLPSS 239
>01_06_0517 +
29981537-29981927,29982024-29982231,29982373-29982544,
29984468-29984533,29984658-29984771,29984880-29984996,
29985097-29985223,29985317-29985603,29985701-29985891,
29985981-29986063,29986175-29986251,29986729-29986896
Length = 666
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 303 VQISQLSETILYVSAWMPADLYSRWVQNETAGSKSVG 193
+ + QL I +V+A + RWV++E KSVG
Sbjct: 538 ILVLQLGSPIYFVNAGYLRERILRWVEDEDNLCKSVG 574
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,105,484
Number of Sequences: 37544
Number of extensions: 158259
Number of successful extensions: 402
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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