Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_E19
(338 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase prote... 33 0.052
AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical ... 29 0.85
AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical ... 29 0.85
AL110490-8|CAB54444.2| 602|Caenorhabditis elegans Hypothetical ... 29 1.1
AF025379-1|AAC14017.1| 602|Caenorhabditis elegans acetylcholine... 29 1.1
Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical pr... 28 1.5
AL110490-9|CAB54453.2| 607|Caenorhabditis elegans Hypothetical ... 27 3.4
AF039650-1|AAC14022.3| 607|Caenorhabditis elegans acetylcholine... 27 3.4
AC006696-8|AAF39989.1| 120|Caenorhabditis elegans Hypothetical ... 27 3.4
AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exteri... 26 6.0
AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector ... 26 6.0
Z81527-12|CAB04277.2| 487|Caenorhabditis elegans Hypothetical p... 26 7.9
Z35719-2|CAA84799.2| 715|Caenorhabditis elegans Hypothetical pr... 26 7.9
AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin syntha... 26 7.9
AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin syntha... 26 7.9
AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical ... 26 7.9
>U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase protein
1 protein.
Length = 617
Score = 33.1 bits (72), Expect = 0.052
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 143 CYYDSKSYIRESQARMLPTDLEPAVSFCTHLLYKSAGIQAD 265
CY+ + + R+ +A+ +P D P + CTH+L+ + AD
Sbjct: 57 CYFTNWAQYRQGRAKFVPEDYTPGL--CTHILFAFGWMNAD 95
>AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical
protein Y73F8A.9 protein.
Length = 419
Score = 29.1 bits (62), Expect = 0.85
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 266 CQLGCRQICTADGCRTKQQAPSP 198
CQ C+Q C C T+ AP+P
Sbjct: 103 CQSSCQQTCQTSSCYTQIAAPAP 125
>AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical
protein Y73F8A.8 protein.
Length = 420
Score = 29.1 bits (62), Expect = 0.85
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 266 CQLGCRQICTADGCRTKQQAPSP 198
CQ C+Q C C T+ AP+P
Sbjct: 104 CQSSCQQTCQTSSCYTQIAAPAP 126
>AL110490-8|CAB54444.2| 602|Caenorhabditis elegans Hypothetical
protein Y48B6A.7 protein.
Length = 602
Score = 28.7 bits (61), Expect = 1.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 294 SQLSETILYVSAWMPADLYS 235
+Q+SE LY++ W PAD Y+
Sbjct: 109 TQISEDCLYLNIWAPADAYN 128
>AF025379-1|AAC14017.1| 602|Caenorhabditis elegans
acetylcholinesterase protein.
Length = 602
Score = 28.7 bits (61), Expect = 1.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 294 SQLSETILYVSAWMPADLYS 235
+Q+SE LY++ W PAD Y+
Sbjct: 109 TQISEDCLYLNIWAPADAYN 128
>Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical
protein T21C9.6 protein.
Length = 1215
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 210 LLFRSAPICCTNLPASKLTHIKWFHSIEKF 299
LLF SAP+C L +KW H ++KF
Sbjct: 7 LLFLSAPLCKFVLYPVIYAFLKWRHPVKKF 36
>AL110490-9|CAB54453.2| 607|Caenorhabditis elegans Hypothetical
protein Y48B6A.8 protein.
Length = 607
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 288 LSETILYVSAWMPADLYS 235
+SE LYV+ W PAD Y+
Sbjct: 116 VSEDCLYVNIWAPADAYN 133
>AF039650-1|AAC14022.3| 607|Caenorhabditis elegans
acetylcholinesterase protein.
Length = 607
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 288 LSETILYVSAWMPADLYS 235
+SE LYV+ W PAD Y+
Sbjct: 116 VSEDCLYVNIWAPADAYN 133
>AC006696-8|AAF39989.1| 120|Caenorhabditis elegans Hypothetical
protein W08E12.2 protein.
Length = 120
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 242 CTADGCRTKQQAPSP*AAYVLEIL*YSSCCHSSRGLCFGY 123
C+ + C AP +Y YSSCC+S+ C GY
Sbjct: 65 CSCNPCNGGGCAPR--CSYCPNNFGYSSCCNSNNFSCCGY 102
>AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exterior
protein 2 protein.
Length = 1262
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +3
Query: 123 VAKAKSSATMTAR---AISENLKHVCCLRTWSLLFRSAPICCTN 245
+AK AT A+ +SE L+H + TW R+ P+ +N
Sbjct: 56 IAKYSEEATRHAQFNDMLSEGLQHAANMYTWRCCSRAVPMAKSN 99
>AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector
protein.
Length = 1262
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +3
Query: 123 VAKAKSSATMTAR---AISENLKHVCCLRTWSLLFRSAPICCTN 245
+AK AT A+ +SE L+H + TW R+ P+ +N
Sbjct: 56 IAKYSEEATRHAQFNDMLSEGLQHAANMYTWRCCSRAVPMAKSN 99
>Z81527-12|CAB04277.2| 487|Caenorhabditis elegans Hypothetical
protein F35E12.10 protein.
Length = 487
Score = 25.8 bits (54), Expect = 7.9
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = +2
Query: 116 SPSSQSKVLCYYDSKSYIRESQARMLPTDL 205
SP+ + + L YD+++Y +++PT++
Sbjct: 306 SPTHKKETLIQYDAQTYTSSQMPQVIPTNM 335
>Z35719-2|CAA84799.2| 715|Caenorhabditis elegans Hypothetical
protein F17C8.3 protein.
Length = 715
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 104 NHPASPSSQSKVLCYYDSKSYIRESQARMLPTDL 205
N+PA P + + L YY S I+ES+ + + L
Sbjct: 681 NNPAKPGAVTGQLTYYSFLSSIKESRYKPIGVQL 714
>AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin synthase
2 protein.
Length = 1668
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 69 SPGYWR*RLRLPTTQHHLVAKAKSSATMTARAISENLKH 185
S G+W + LP Q HLVA S T+ + A +N H
Sbjct: 286 SSGFWALPMFLPNLQKHLVA-IPVSLTLISLAWWQNFVH 323
>AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin synthase
protein 2 protein.
Length = 1668
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 69 SPGYWR*RLRLPTTQHHLVAKAKSSATMTARAISENLKH 185
S G+W + LP Q HLVA S T+ + A +N H
Sbjct: 286 SSGFWALPMFLPNLQKHLVA-IPVSLTLISLAWWQNFVH 323
>AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical
protein Y55B1AL.3a protein.
Length = 923
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 57 PWSPSPGYWR*RLRLPTTQHHLVAKAKSSATMTARAISEN 176
P+SP P + R LR P T V KS++ + + +EN
Sbjct: 18 PFSPIPKFSR--LRTPRTSREYVCPLKSTSPQSPSSSTEN 55
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,245,787
Number of Sequences: 27780
Number of extensions: 121589
Number of successful extensions: 363
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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