Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_E19
         (338 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   1.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   1.8  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   5.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   5.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     20   7.1  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 336 RSIISRAPGSMVQISQLSETILYVSAWMPADLYSRWVQNETAGSK 202
           R  ++  PGS     Q SE+    S  MP+D++   +     GS+
Sbjct: 547 RFAVTLRPGSNSIERQSSESPFTTSTIMPSDIFYDKLNKAIGGSE 591


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 336 RSIISRAPGSMVQISQLSETILYVSAWMPADLYSRWVQNETAGSK 202
           R  ++  PGS     Q SE+    S  MP+D++   +     GS+
Sbjct: 547 RFAVTLRPGSNSIERQSSESPFTTSTIMPSDIFYDKLNKAIGGSE 591


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 294 SQLSETILYVSAWMP 250
           + +SE  LY++ W+P
Sbjct: 120 TNISEDCLYLNIWVP 134


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 294 SQLSETILYVSAWMP 250
           + +SE  LY++ W+P
Sbjct: 120 TNISEDCLYLNIWVP 134


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = -2

Query: 319 CARINGPNFSIE*NHFICVSLDAGRFVQQMGAERNSR 209
           CA    PNF     + ICV +   + V+ +    N +
Sbjct: 315 CAATKNPNFDRMQGNPICVQIPWDKNVEALAKWANGQ 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,168
Number of Sequences: 438
Number of extensions: 1470
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)