Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_E18
(205 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom... 27 0.45
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 24 3.2
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 23 4.2
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 23 4.2
SPCC1682.05c |||signal recognition particle subunit |Schizosacch... 23 4.2
SPBC1348.06c |||conserved fungal protein|Schizosaccharomyces pom... 23 5.5
SPBPB2B2.15 |||conserved fungal protein|Schizosaccharomyces pomb... 23 5.5
SPAC977.05c |||conserved fungal protein|Schizosaccharomyces pomb... 23 5.5
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 23 5.5
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 23 7.3
SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces pombe... 23 7.3
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 23 7.3
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz... 23 7.3
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ... 22 9.7
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb... 22 9.7
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 22 9.7
>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 26.6 bits (56), Expect = 0.45
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 43 GISFMFYCLSKNPKLSESRGEYFKEAMEYLKPALETTAG 159
G++ +KNPK S+S +FK+ Y K E G
Sbjct: 369 GVNAQLITKTKNPKWSKSHEYHFKDLENYFKLPSEYNNG 407
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 23.8 bits (49), Expect = 3.2
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 131 KYSIASLKYSPLLSDNLGFLDKQ*NMNEIPLLPTYNPPST 12
KY A+L+ D + L+K + N +P + Y PP T
Sbjct: 28 KYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGT 67
>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 23.4 bits (48), Expect = 4.2
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 52 FMFYCL--SKNPKLSESRGEYFKEAMEYLKPALETTAGD 162
+++ C+ S N L + EYF ++++Y+ E GD
Sbjct: 42 YLWPCIMGSVNLNLQDRENEYFFDSIQYIIYTSELLVGD 80
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 23.4 bits (48), Expect = 4.2
Identities = 12/51 (23%), Positives = 23/51 (45%)
Frame = -3
Query: 191 PASPSKNEVLSPAVVSNAGFKYSIASLKYSPLLSDNLGFLDKQ*NMNEIPL 39
P P + ++ A + +G + S ++SP +DN+ L + PL
Sbjct: 222 PMKPKEVSLMGKANSNRSGHSHQPQSTQFSPPANDNISKLPSSFTIVNDPL 272
>SPCC1682.05c |||signal recognition particle subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 23.4 bits (48), Expect = 4.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 79 PKLSESRGEYFKEAMEYLK 135
P L E+R ++F E EY+K
Sbjct: 63 PLLLEARSDHFYEGNEYIK 81
>SPBC1348.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 203
Score = 23.0 bits (47), Expect = 5.5
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +1
Query: 85 LSESRGEYFKEAMEY---LKPALETTAGDKTS 171
L+ES+GE+F+ +E L P L T A + T+
Sbjct: 60 LTESKGEFFQRMLEQEPRLIPRLFTIAENDTA 91
>SPBPB2B2.15 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 203
Score = 23.0 bits (47), Expect = 5.5
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +1
Query: 85 LSESRGEYFKEAMEY---LKPALETTAGDKTS 171
L+ES+GE+F+ +E L P L T A + T+
Sbjct: 60 LTESKGEFFQRMLEQEPRLIPRLFTIAENDTA 91
>SPAC977.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 204
Score = 23.0 bits (47), Expect = 5.5
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +1
Query: 85 LSESRGEYFKEAMEY---LKPALETTAGDKTS 171
L+ES+GE+F+ +E L P L T A + T+
Sbjct: 61 LTESKGEFFQRMLEQEPRLIPRLFTIAENDTA 92
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 173 NEVLSPAVVSNAGFKYSIASLKY 105
N VL+P + SNA ++S L Y
Sbjct: 555 NSVLNPCIPSNAVIEFSSIYLHY 577
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 22.6 bits (46), Expect = 7.3
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = +1
Query: 70 SKNPKLSESRGEYFKEAMEYLKPALETTAGDKT 168
+K E+ +Y+ YL + + T+ DKT
Sbjct: 359 TKKKDFEETSRDYYTSLSRYLSKSEKETSSDKT 391
>SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 22.6 bits (46), Expect = 7.3
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = -3
Query: 203 KAYVPASPSKNEVLSPAVVSNAGFKYSIASLKYSPLLSDNLGFLDKQ*NMNEIP-LLPTY 27
K + AS ++VL V GF+ LKY L N+G +K+ N +P LL
Sbjct: 65 KTFCGASVCLHKVL---VQRQFGFEEKSHGLKYKKLFRRNIGTSEKK---NRLPDLLELS 118
Query: 26 NPPSTWP 6
+ P P
Sbjct: 119 SSPRRLP 125
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 22.6 bits (46), Expect = 7.3
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = +2
Query: 101 VNILKKLWNT*NQHWKPLLE 160
+ + +N N HW+P LE
Sbjct: 1729 LELFMNFYNFSNSHWEPFLE 1748
>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 674
Score = 22.6 bits (46), Expect = 7.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 109 FKEAMEYLKPALETTAGDKTSFLL 180
F+E ++YL P T GDK +L
Sbjct: 634 FEEYLDYLFPDTATDQGDKMRKML 657
>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 621
Score = 22.2 bits (45), Expect = 9.7
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +1
Query: 70 SKNPKLSESRGEYFKEAMEYLK 135
++NP++ R E +A+EY+K
Sbjct: 59 NRNPRMRVHRLENVNKALEYIK 80
>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 955
Score = 22.2 bits (45), Expect = 9.7
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 28 YVGSSGISFMFYCLSKNPK-LSESRGEYFKEAMEYL 132
+VG + +Y +KNPK + + ++F+ M+ L
Sbjct: 738 FVGKQCTNMFYYMSNKNPKEIPDVIDDFFRLMMDAL 773
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 22.2 bits (45), Expect = 9.7
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 125 NT*NQHWKPLLEIKLHSYLVMLVHML 202
NT + ++ E LH+YL L+H +
Sbjct: 943 NTLSNFYRNAQEKSLHAYLCQLLHSI 968
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.135 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 909,165
Number of Sequences: 5004
Number of extensions: 15313
Number of successful extensions: 58
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 47
effective length of database: 2,127,290
effective search space used: 42545800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
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