Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_E18
(205 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0009 - 89127-89924,90090-90518,90582-90716,91102-91382,916... 27 1.6
02_03_0411 - 18739279-18739902,18741471-18741671 27 2.1
03_01_0283 + 2193632-2195182 27 2.8
11_01_0428 + 3279662-3279784,3281676-3281756,3281845-3281933,328... 26 4.8
03_06_0186 - 32197461-32197751,32204940-32205548,32205603-32207009 26 4.8
03_01_0279 - 2141327-2141437,2141667-2141789,2141869-2142057,214... 26 4.8
02_02_0515 - 11110173-11110199,11110497-11110628,11110790-111108... 26 4.8
02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-41... 25 6.4
11_01_0201 + 1569094-1569319,1569718-1569761,1570022-1570060,157... 25 8.4
09_06_0086 - 20763085-20763162,20763233-20763286,20763287-207639... 25 8.4
09_02_0113 + 4408171-4409415,4409902-4409907 25 8.4
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 25 8.4
03_01_0285 + 2205165-2206781 25 8.4
>03_01_0009 -
89127-89924,90090-90518,90582-90716,91102-91382,
91634-91809,91899-92011,92157-92278,92375-92594
Length = 757
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +2
Query: 65 VYLKILNYLRVEVNILKKLWNT*NQHWKPLLEI--KL-HSYLVMLV 193
VY LN+ V + +L N+ N+H++ LE+ K+ H +LVML+
Sbjct: 463 VYKGYLNHSAVAIKVLHSDDNSSNKHFRQELEVLGKIHHPHLVMLL 508
>02_03_0411 - 18739279-18739902,18741471-18741671
Length = 274
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = +1
Query: 70 SKNPKLSESRGEYFKEAMEYLKPALETTAGDKTSFLLGDAGTYAL 204
S + S SRG + P E+ +G + + +GD G + L
Sbjct: 192 SSSSSASSSRGSAVSSTLSSFSPTDESASGAGSGYAVGDNGAHVL 236
>03_01_0283 + 2193632-2195182
Length = 516
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 40 SGISFMFYCLSKNPKLSESRGEYFKEAMEYLKPALETTAGDKTSFLLGDA 189
+ +S+ FY LSKNP++ + + +E L P GD ++ DA
Sbjct: 317 AALSWFFYILSKNPRVEQ-------KLLEELAPIAAQKGGDGGGMVIFDA 359
>11_01_0428 +
3279662-3279784,3281676-3281756,3281845-3281933,
3282011-3282085,3282211-3282269,3282316-3282414,
3282762-3283013,3283050-3283180
Length = 302
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +1
Query: 4 RGHVEGGLYVGSSGISFMF-YCLSKNPKLSESRGEYFKEAMEYLKP 138
RG GG Y G + + Y E +GEYF+E +Y P
Sbjct: 212 RGRGRGGYYGGGRRGGYGYDYGYGGRGDYYEDQGEYFEEPEDYPPP 257
>03_06_0186 - 32197461-32197751,32204940-32205548,32205603-32207009
Length = 768
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 83 LGFLDKQ*NMNEIPLLPTYNPPSTWPR 3
LGF ++ + PLL NPP W R
Sbjct: 187 LGFTNRAKDQQLAPLLVAENPPEYWQR 213
>03_01_0279 -
2141327-2141437,2141667-2141789,2141869-2142057,
2142270-2142989,2144857-2144931
Length = 405
Score = 25.8 bits (54), Expect = 4.8
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = -3
Query: 179 SKNEVLSPAVVSNAGFKYSIASLKYSPLLS-DNL--GFLDKQ*NMN-EIPLLPTYNPPST 12
S + +P + SN+ ++A +SPLLS D+ FL+++ N + + LLP+ + T
Sbjct: 67 SSSSTATPPLCSNSNDITAVADTAFSPLLSFDSTLSAFLEQEQNPDQDTKLLPSIDETFT 126
Query: 11 WP 6
P
Sbjct: 127 AP 128
>02_02_0515 -
11110173-11110199,11110497-11110628,11110790-11110891,
11110970-11111150,11112149-11112276
Length = 189
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +2
Query: 68 YLKILNYLRVEVNILKKLWNT*NQHWKPLLEIKL 169
YL ILN R EV IL L N+H L ++L
Sbjct: 150 YLAILNAKRREVQILDSLAKPINEHRPELGRVRL 183
>02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-418153
Length = 2177
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 49 SFMFYCLSKNPKLSESRGEYFKEAMEYLKPALETTAGDKTS 171
+FM+ L+KNP +G + ++L +ET D S
Sbjct: 1795 TFMYRRLTKNPNYYNLQGVSHRHLSDHLSELVETVLNDLES 1835
>11_01_0201 +
1569094-1569319,1569718-1569761,1570022-1570060,
1570544-1570558
Length = 107
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/47 (27%), Positives = 29/47 (61%)
Frame = -3
Query: 191 PASPSKNEVLSPAVVSNAGFKYSIASLKYSPLLSDNLGFLDKQ*NMN 51
P K +++S A++++ G +++ + Y+P SD +G L++ N+N
Sbjct: 23 PQDSGKTKLIS-AILASIG--HTLRCVVYAPSASDIVGILNETKNLN 66
>09_06_0086 -
20763085-20763162,20763233-20763286,20763287-20763975,
20764173-20764324,20764404-20764604,20764920-20765064,
20765552-20765588,20765880-20765965,20766093-20766329,
20766501-20766609,20767025-20767135
Length = 632
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 56 MNEIPLLPTYNPPSTWPR 3
+NEIP LP +N PS+ R
Sbjct: 330 LNEIPELPVHNTPSSAAR 347
>09_02_0113 + 4408171-4409415,4409902-4409907
Length = 416
Score = 25.0 bits (52), Expect = 8.4
Identities = 20/65 (30%), Positives = 27/65 (41%)
Frame = -3
Query: 197 YVPASPSKNEVLSPAVVSNAGFKYSIASLKYSPLLSDNLGFLDKQ*NMNEIPLLPTYNPP 18
++P S S+ L PA VS S + L GF+ + + LLPT P
Sbjct: 83 HLPFSASRGR-LHPAAVSPVDASSSSSPRLSLDYLGGTKGFIIYDVYLGLVLLLPTSLPS 141
Query: 17 STWPR 3
T PR
Sbjct: 142 GTLPR 146
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 25.0 bits (52), Expect = 8.4
Identities = 19/62 (30%), Positives = 24/62 (38%)
Frame = -3
Query: 200 AYVPASPSKNEVLSPAVVSNAGFKYSIASLKYSPLLSDNLGFLDKQ*NMNEIPLLPTYNP 21
AY P SPS N S YS S YS + + + N P P+Y+P
Sbjct: 1689 AYSPTSPSYNPTSPSYSYSPTSPSYSPTSPSYS-YSPTSPSYSPTSPSYNYSPTSPSYSP 1747
Query: 20 PS 15
S
Sbjct: 1748 TS 1749
>03_01_0285 + 2205165-2206781
Length = 538
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 37 SSGISFMFYCLSKNPKLSE 93
SS +S+ FY LS NP++ +
Sbjct: 330 SSALSWFFYLLSTNPRVEQ 348
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.135 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,562,715
Number of Sequences: 37544
Number of extensions: 85243
Number of successful extensions: 251
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 14,793,348
effective HSP length: 47
effective length of database: 13,028,780
effective search space used: 260575600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
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