Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_E18
         (205 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glut...    29   0.60 
AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type ion...    29   0.60 
AC006708-12|AAT81173.1|  908|Caenorhabditis elegans Hypothetical...    29   0.60 
AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical...    29   0.60 
Z78200-5|CAB01584.2|  512|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z68298-8|CAA92605.3|  449|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    25   7.4  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    25   7.4  
AC024796-10|AAK29896.1|  623|Caenorhabditis elegans Hypothetical...    25   7.4  
U39655-1|AAA80408.1|  395|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U21321-10|AAG00048.2|  325|Caenorhabditis elegans T box family p...    25   9.7  

>U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class
           glutamate receptor protein1 protein.
          Length = 1025

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -3

Query: 200 AYVPASPSKNEV-LSPAVVSNAGFKYSIASLKYSPLLSDNLGFLD 69
           A+V A    N + L+  +V +    +S+AS+ +SPLL+ +  F+D
Sbjct: 66  AFVDAKSGDNRLELTQDIVCSQMLNHSLASVIFSPLLTSSSRFID 110


>AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type
           ionotropic glutamatereceptor NMR-1 protein.
          Length = 1025

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -3

Query: 200 AYVPASPSKNEV-LSPAVVSNAGFKYSIASLKYSPLLSDNLGFLD 69
           A+V A    N + L+  +V +    +S+AS+ +SPLL+ +  F+D
Sbjct: 66  AFVDAKSGDNRLELTQDIVCSQMLNHSLASVIFSPLLTSSSRFID 110


>AC006708-12|AAT81173.1|  908|Caenorhabditis elegans Hypothetical
           protein Y110A7A.9b protein.
          Length = 908

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 164 LSPAVVSNAG-FKYSIASLKYSPLLSDNLGFLDKQ*NMNEI 45
           LSP V+SN    ++ +++ K  P+L   + FL K  +MN +
Sbjct: 583 LSPLVLSNDNTLRFVVSNTKNQPILEKEIPFLYKDDSMNNV 623


>AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical
           protein Y110A7A.9a protein.
          Length = 1019

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 164 LSPAVVSNAG-FKYSIASLKYSPLLSDNLGFLDKQ*NMNEI 45
           LSP V+SN    ++ +++ K  P+L   + FL K  +MN +
Sbjct: 694 LSPLVLSNDNTLRFVVSNTKNQPILEKEIPFLYKDDSMNNV 734


>Z78200-5|CAB01584.2|  512|Caenorhabditis elegans Hypothetical
           protein T04H1.7 protein.
          Length = 512

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 43  GISFMFYCLSKNPKLSESRGEYFKEAMEYLKPALETTA 156
           G S  FY + +N K   +   +F+   + L+P  ETT+
Sbjct: 199 GNSIPFYGIRRNLKFHSAWRNFFEVQSKTLEPLFETTS 236


>Z68298-8|CAA92605.3|  449|Caenorhabditis elegans Hypothetical
           protein F44D12.9 protein.
          Length = 449

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 141 CWFQVFHSFFKIFTSTL 91
           CW Q+F++F+  F S L
Sbjct: 268 CWVQLFNNFYVYFVSLL 284


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = -3

Query: 200  AYVPASPSKNEVLSPAVVSNAGFKYSIASLKYSPLLSDNLGFLDKQ*NMNEIPLLPTYNP 21
            A  P +PS    +SP V S +  ++S+ S  YSP    +  +        + P+ P+Y+P
Sbjct: 1559 ALSPRTPSYGG-MSPGVYSPSSPQFSMTSPHYSP---TSPSYSPTSPAAGQSPVSPSYSP 1614

Query: 20   PS 15
             S
Sbjct: 1615 TS 1616


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = -3

Query: 200  AYVPASPSKNEVLSPAVVSNAGFKYSIASLKYSPLLSDNLGFLDKQ*NMNEIPLLPTYNP 21
            A  P +PS    +SP V S +  ++S+ S  YSP    +  +        + P+ P+Y+P
Sbjct: 1566 ALSPRTPSYGG-MSPGVYSPSSPQFSMTSPHYSP---TSPSYSPTSPAAGQSPVSPSYSP 1621

Query: 20   PS 15
             S
Sbjct: 1622 TS 1623


>AC024796-10|AAK29896.1|  623|Caenorhabditis elegans Hypothetical
           protein Y48G1C.7 protein.
          Length = 623

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 116 KLWNT*NQHWKPLLEIKLHSYLVML 190
           ++W T + H   L+E +LH Y   L
Sbjct: 216 RIWKTPSSHRSDLIEFQLHVYTATL 240


>U39655-1|AAA80408.1|  395|Caenorhabditis elegans Hypothetical
           protein C46F4.1 protein.
          Length = 395

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 40  SGISFMFYCLSKNPKLSESRGEYF 111
           S +SF+ YC   N  LS  R  +F
Sbjct: 330 SSVSFVLYCTMSNEYLSTFRALFF 353


>U21321-10|AAG00048.2|  325|Caenorhabditis elegans T box family
           protein 35 protein.
          Length = 325

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 168 SFISSSGFQCWFQVF 124
           +F+SSS F CW  +F
Sbjct: 268 NFVSSSHFPCWDSIF 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.315    0.135    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,831,404
Number of Sequences: 27780
Number of extensions: 77792
Number of successful extensions: 250
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 12,740,198
effective HSP length: 47
effective length of database: 11,434,538
effective search space used: 228690760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)