Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_E18
         (205 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   0.84 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   1.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   2.6  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    20   3.4  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           19   4.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     19   7.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               19   7.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              19   7.8  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 0.84
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 116 SLKYSPLLSDNLGFLDKQ 63
           +L YSPLLS  L ++D +
Sbjct: 267 NLYYSPLLSHGLYYVDTE 284


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 20.6 bits (41), Expect = 1.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 77  ILNYLRVEVNILKKLW 124
           I+N +RV V+   +LW
Sbjct: 109 IINIIRVRVDACDRLW 124


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 2.6
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 86  NLGFLDKQ*NMNEIPLLPTYNPPST 12
           NLG+ +K     + P  P Y  P T
Sbjct: 97  NLGYTNKMSTRGKRPASPGYVQPPT 121


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 19.8 bits (39), Expect = 3.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 50  EIPLLPTYNPPSTWPR 3
           +IP L    PP+++PR
Sbjct: 371 QIPRLRYIGPPTSFPR 386


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 19.4 bits (38), Expect = 4.5
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 56  MNEIPLLPTYN 24
           MN++P  P YN
Sbjct: 77  MNKLPTTPEYN 87


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = +1

Query: 52  FMFYCLSKNPKLSESRGEYFKEAMEYLK 135
           F  YC  +  + ++  G+Y +  +  LK
Sbjct: 427 FHCYCPVRFGRKADPNGDYIRRYLPVLK 454


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = +2

Query: 137 QHWKPLL-EIKLHSYLVMLV 193
           +HW PLL    L + L MLV
Sbjct: 500 EHWMPLLPNWILENILDMLV 519


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 167 VLSPAVVSNAGFKYS 123
           + S  VVS AG+K+S
Sbjct: 17  IASTYVVSVAGYKHS 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.135    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,177
Number of Sequences: 438
Number of extensions: 876
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  2785926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.8 bits)