Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_E17
(225 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma... 30 0.036
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 0.33
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 0.33
SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc... 25 1.8
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 24 3.1
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P... 23 5.4
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 23 7.2
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 22 9.5
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 22 9.5
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 22 9.5
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 22 9.5
>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 30.3 bits (65), Expect = 0.036
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -2
Query: 212 TQFVPMSCG*DFQFCISVTKLQQKGGPSCSNFPWSFVGTSECMLRVVF 69
+Q +P+ CG F + LQ G C FP+S +G E LR V+
Sbjct: 287 SQALPLICGGFLPFVLLTMDLQTAGTILCVFFPYSLIGHKE--LRFVY 332
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.1 bits (57), Expect = 0.33
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 186 VRFSILYQRYQAPTKGWPILLELSMELCRHLRMYATRCL 70
+ F+ R QA K W ++S +L R R+Y CL
Sbjct: 1742 IHFAEYKSRVQAVKKQWVDSTDISAQLERFFRVYKDECL 1780
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.1 bits (57), Expect = 0.33
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 186 VRFSILYQRYQAPTKGWPILLELSMELCRHLRMYATRCL 70
+ F+ R QA K W ++S +L R R+Y CL
Sbjct: 1742 IHFAEYKSRVQAVKKQWVDSTDISAQLERFFRVYKDECL 1780
>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 302
Score = 24.6 bits (51), Expect = 1.8
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = -2
Query: 167 ISVTKLQQKGGPSCSNFPWSFVGTSECMLRVVFYNKLNLNTITKLCHP 24
+S ++ + K S F + V + + FY KL + I K HP
Sbjct: 151 VSQSETKPKANISNFRFNHTMVRVKDPEPSIAFYEKLGMKVIDKADHP 198
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1095
Score = 23.8 bits (49), Expect = 3.1
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -3
Query: 193 HVGKIFNSV--SALPSSNKRVAHPARTFHGALSAPQNVCYALSSI 65
H G+++ + SALP+ K + P + A +N+C A+ I
Sbjct: 939 HGGELYAEICSSALPALFKMLELPDARDEEQIYATENICVAICKI 983
>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 134 PSCSNFPWSFVGTSE 90
P + FP SFVGT+E
Sbjct: 211 PDYTTFPSSFVGTAE 225
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 22.6 bits (46), Expect = 7.2
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -1
Query: 159 YQAPTKGWPILLELSMELCRHLRMY 85
+ APT WPI L +E MY
Sbjct: 902 FHAPTLSWPIANTLMIEPTESESMY 926
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -2
Query: 68 YNKLNLNTITKLCHPKRHHDPR 3
Y LN++ + + K HDPR
Sbjct: 739 YKHLNISELMRQSEYKNDHDPR 760
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 22.2 bits (45), Expect = 9.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 86 MLRVVFYNKLNLNTITKLCHPKRHHDPR 3
+L+ F NKLNLN + K+ P R D R
Sbjct: 334 VLQNPFPNKLNLNMLLKI--PGRLQDRR 359
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 124 RTFHGALSAPQNVCYALS 71
RT G LS+P VC +LS
Sbjct: 913 RTEVGFLSSPHRVCVSLS 930
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 174 ILYQRYQAPTKGWPILLELSME 109
+L+QRYQ G+ + LE E
Sbjct: 1741 LLFQRYQKELNGFKVQLEEERE 1762
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,006,938
Number of Sequences: 5004
Number of extensions: 17467
Number of successful extensions: 46
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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