Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_E17
(225 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0627 + 5451140-5451839,5452635-5452662,5452730-5452786,545... 27 2.0
05_01_0348 + 2726710-2727026,2727289-2727459,2727555-2727628,272... 27 2.7
03_05_0054 - 20301803-20301895,20301957-20302005,20302069-20302370 27 2.7
08_02_0473 + 17586507-17587004,17587146-17588145,17588314-175885... 26 3.6
01_06_1751 + 39656276-39656279,39656411-39656515,39656680-396568... 26 3.6
12_02_0261 - 16538028-16538310,16543969-16544456 26 4.7
12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398... 26 4.7
11_01_0204 - 1612505-1612636,1612809-1612926,1613050-1613162,161... 26 4.7
06_01_0848 - 6463100-6463293,6463983-6465144 26 4.7
07_03_0313 + 16620817-16621515 25 6.2
12_01_0207 - 1559491-1559544,1559806-1560161,1560244-1560363,156... 25 8.2
08_02_1630 - 28371925-28372407,28372514-28372714,28372797-28374242 25 8.2
>08_01_0627 +
5451140-5451839,5452635-5452662,5452730-5452786,
5453205-5453874
Length = 484
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 180 FSILYQRYQAPTKGWPILLELSMELCRHL 94
F IL + + A K +P+L EL + LC +L
Sbjct: 275 FDILDEGFSAAVKKFPLLEELELTLCDNL 303
>05_01_0348 +
2726710-2727026,2727289-2727459,2727555-2727628,
2727872-2727969,2728159-2728227,2728773-2728819,
2728949-2729072,2729148-2729216,2729297-2729400,
2729826-2729901,2730275-2730375,2730648-2730705
Length = 435
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Frame = +1
Query: 70 KTTRSIHSEVPTKLHGKFEQDG---PPFCWSLVTLIQN*KS---YPHDIGTN 207
K R IH + +L +F +DG P S +TL +N + +PH++ T+
Sbjct: 243 KFVRDIHDMMANRLQEQFAKDGSSSPANSRSFITLEKNGNTFELFPHEVSTD 294
>03_05_0054 - 20301803-20301895,20301957-20302005,20302069-20302370
Length = 147
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 17 GVLGDIV*LLCSS*VYYRRQRVAYILRCRQSSMESSSR 130
G G I L+C Y+RR VA + +M SSS+
Sbjct: 10 GAQGTIGSLVCREVEYFRRMEVAVVSHDHGKNMSSSSK 47
>08_02_0473 +
17586507-17587004,17587146-17588145,17588314-17588566,
17588647-17588757,17588845-17588905,17588994-17589086,
17589164-17589349
Length = 733
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -3
Query: 211 HNLCQCHV-GKIFNSVSALPSSNK 143
H+ C CHV G IFN AL +SNK
Sbjct: 699 HHEC-CHVKGDIFNPEGALATSNK 721
>01_06_1751 +
39656276-39656279,39656411-39656515,39656680-39656801,
39657826-39658869
Length = 424
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 223 SVCTHNLCQCHVGKIFNSVSALPSSNKRVAH 131
S CT +LC C K+ + S LP K V H
Sbjct: 13 SSCTCHLCSCKANKL-SYTSNLPGRGKLVNH 42
>12_02_0261 - 16538028-16538310,16543969-16544456
Length = 256
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 150 PTKGWPILLELSMELCRHLRMYATRC 73
P+ + LL+ +M+ C HL+ +A RC
Sbjct: 210 PSYDFAHLLQSAMKSCIHLKTFAIRC 235
>12_01_0503 -
3981603-3981730,3982858-3983023,3983057-3983139,
3983250-3983301,3983497-3983654,3983756-3985617,
3986029-3986093,3986176-3986340,3986836-3986893,
3987479-3987590,3987661-3987712,3988080-3988140,
3988220-3988377,3988705-3988787,3988897-3988945,
3989122-3989185,3990225-3990317,3990410-3990543,
3991364-3991585,3991815-3991937,3992103-3992267,
3993064-3993450
Length = 1479
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 182 DFQFCISVTKLQQKGGPSCSN 120
D C SV + QQK G +CS+
Sbjct: 522 DSDICFSVGEFQQKDGENCSS 542
>11_01_0204 -
1612505-1612636,1612809-1612926,1613050-1613162,
1613640-1613712,1613797-1613936,1614059-1614129,
1614262-1614430,1614625-1614690,1615081-1615179,
1615298-1615471,1615745-1615823,1615929-1616035,
1616395-1616439
Length = 461
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 85 IHSEVPTKLHGKFEQDGPPFCWS-LVT 162
IH+ VP K+ G + +G WS LVT
Sbjct: 215 IHNHVPVKIFGSHKDEGYAIDWSPLVT 241
>06_01_0848 - 6463100-6463293,6463983-6465144
Length = 451
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -2
Query: 182 DFQFCISVT-KLQQKGGPSCSNFPWSFVGTSECMLRVVF 69
+FQF +T L K G C FP ++ T+EC + ++F
Sbjct: 395 NFQFPSRITLNLSLKEG--CLQFPLGYLMTNECAVLLIF 431
>07_03_0313 + 16620817-16621515
Length = 232
Score = 25.4 bits (53), Expect = 6.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 85 IHSEVPTKLHGKFEQDGPPFCWSLVTL 165
IH++VP LHG + DG C SL L
Sbjct: 52 IHAKVPVLLHG--DGDGRAVCESLAIL 76
>12_01_0207 -
1559491-1559544,1559806-1560161,1560244-1560363,
1561523-1561568,1561741-1561858,1561981-1562093,
1562586-1562658,1562743-1562882,1563005-1563075,
1563228-1563396,1563594-1563659,1564052-1564150,
1564271-1564444,1564720-1564798,1564901-1565007,
1565391-1565435
Length = 609
Score = 25.0 bits (52), Expect = 8.2
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 85 IHSEVPTKLHGKFEQDGPPFCWS-LVT 162
IH+ VP K+ G + +G WS LVT
Sbjct: 215 IHNHVPVKIFGGHKDEGYAIDWSPLVT 241
>08_02_1630 - 28371925-28372407,28372514-28372714,28372797-28374242
Length = 709
Score = 25.0 bits (52), Expect = 8.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -1
Query: 183 RFSILYQRYQAPTKGWPILLELSMELCRHLRMYATRCL 70
+ S+L + + P+LL L EL +LR RC+
Sbjct: 225 KLSLLLEAARCALSYGPLLLLLDEELAEYLRELLARCM 262
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,667,737
Number of Sequences: 37544
Number of extensions: 115279
Number of successful extensions: 280
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 255319440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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