Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_E17
(225 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-16|CAB16530.2| 404|Caenorhabditis elegans Hypothetical p... 27 2.4
Z81542-12|CAB04422.2| 363|Caenorhabditis elegans Hypothetical p... 27 2.4
L12018-1|AAA65458.1| 518|Caenorhabditis elegans Polk (dna polym... 27 2.4
AL023821-3|CAA19439.2| 363|Caenorhabditis elegans Hypothetical ... 27 2.4
Z92838-2|CAB07408.1| 211|Caenorhabditis elegans Hypothetical pr... 26 4.1
AF016450-10|AAB65990.1| 166|Caenorhabditis elegans Hypothetical... 26 4.1
Z83238-8|CAB05799.2| 355|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z75552-3|CAA99940.1| 465|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical p... 25 9.6
Z72515-2|CAA96682.3| 329|Caenorhabditis elegans Hypothetical pr... 25 9.6
U58732-6|AAB00596.3| 333|Caenorhabditis elegans Serpentine rece... 25 9.6
U58732-5|AAW88398.1| 337|Caenorhabditis elegans Serpentine rece... 25 9.6
U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein. 25 9.6
U37548-4|AAA79200.2| 373|Caenorhabditis elegans Hypothetical pr... 25 9.6
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 25 9.6
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr... 25 9.6
>Z99281-16|CAB16530.2| 404|Caenorhabditis elegans Hypothetical
protein Y57G11C.31 protein.
Length = 404
Score = 26.6 bits (56), Expect = 2.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -2
Query: 140 GGPSCSNFPWSFVGTSECMLRVVFYNKLNL 51
GGP+ N ++ ++EC+L V +N++ L
Sbjct: 9 GGPNLRNLLYTIWTSTECVLYKVLFNRVTL 38
>Z81542-12|CAB04422.2| 363|Caenorhabditis elegans Hypothetical
protein Y102A5B.1 protein.
Length = 363
Score = 26.6 bits (56), Expect = 2.4
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Frame = +1
Query: 73 TTRSIHSEVPTKLHGKFE-QDGPPF----CWSLVTLIQN 174
TTRS+ S +PT G + DG + CW LVT Q+
Sbjct: 91 TTRSVTSTIPTPSVGNYTCTDGFTYINNKCWKLVTSSQS 129
>L12018-1|AAA65458.1| 518|Caenorhabditis elegans Polk (dna
polymerase kappa) homologprotein 1 protein.
Length = 518
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -1
Query: 183 RFSILYQRYQAPTKGWPILLELSMELCRHL 94
R SI +R +PT + ILLE E+CR L
Sbjct: 375 RKSISVERTFSPTSDFNILLEEHQEICRML 404
>AL023821-3|CAA19439.2| 363|Caenorhabditis elegans Hypothetical
protein Y102A5B.1 protein.
Length = 363
Score = 26.6 bits (56), Expect = 2.4
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Frame = +1
Query: 73 TTRSIHSEVPTKLHGKFE-QDGPPF----CWSLVTLIQN 174
TTRS+ S +PT G + DG + CW LVT Q+
Sbjct: 91 TTRSVTSTIPTPSVGNYTCTDGFTYINNKCWKLVTSSQS 129
>Z92838-2|CAB07408.1| 211|Caenorhabditis elegans Hypothetical
protein T03D8.3 protein.
Length = 211
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 95 SECMLRVVFYNKLNLNTITKLCHPKRHHD 9
SE + +++ N ++ NTI K H KR D
Sbjct: 145 SESLQKILEENNMHANTIAKKFHDKRSSD 173
>AF016450-10|AAB65990.1| 166|Caenorhabditis elegans Hypothetical
protein B0238.12 protein.
Length = 166
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/41 (24%), Positives = 18/41 (43%)
Frame = -3
Query: 217 CTHNLCQCHVGKIFNSVSALPSSNKRVAHPARTFHGALSAP 95
C +N+CQC G + N ++ + + P F + P
Sbjct: 66 CINNVCQCRSGYVRNEITRQCVRQAQCSRPGTGFGSSTPFP 106
>Z83238-8|CAB05799.2| 355|Caenorhabditis elegans Hypothetical
protein T08G3.10 protein.
Length = 355
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 134 PSCSNFPWSFVGTSECMLRVVFYNKLNL 51
P+C NFP +F + FYN L L
Sbjct: 193 PNCHNFPSNFSQIEYAIETTNFYNTLQL 220
>Z75552-3|CAA99940.1| 465|Caenorhabditis elegans Hypothetical
protein W04D2.3 protein.
Length = 465
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +1
Query: 79 RSIHSEVPTKLHGKFEQDGPPFCWS 153
R I P K G +EQ +CWS
Sbjct: 50 RPIECMFPNKFPGSWEQYAENYCWS 74
>Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical
protein F43G9.6 protein.
Length = 2034
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -2
Query: 161 VTKLQQKGGPSCSNFPWSFVGTSECMLRV 75
++KL++ P+ N FVG + C++RV
Sbjct: 1359 ISKLKKGKPPAAINTVVDFVGPTRCLVRV 1387
>Z72515-2|CAA96682.3| 329|Caenorhabditis elegans Hypothetical
protein T11A5.2 protein.
Length = 329
Score = 24.6 bits (51), Expect = 9.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 7 GSWWRFG*HSLVIVFKLSLL*KTTRSIHSEVPTKLHG 117
GSW +G V + + KT R IH ++ LHG
Sbjct: 281 GSWPLYG------VVSIMIFGKTIRKIHGKIKQSLHG 311
>U58732-6|AAB00596.3| 333|Caenorhabditis elegans Serpentine
receptor, class v protein5, isoform a protein.
Length = 333
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -2
Query: 125 SNFPWSFVGTSECMLRVVFYN-KLNLNTITKL 33
S+FPW+ + TS + + + Y+ K+ L T KL
Sbjct: 275 SHFPWALLVTSGVLRKQMIYDTKIFLRTAFKL 306
>U58732-5|AAW88398.1| 337|Caenorhabditis elegans Serpentine
receptor, class v protein5, isoform b protein.
Length = 337
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -2
Query: 125 SNFPWSFVGTSECMLRVVFYN-KLNLNTITKL 33
S+FPW+ + TS + + + Y+ K+ L T KL
Sbjct: 279 SHFPWALLVTSGVLRKQMIYDTKIFLRTAFKL 310
>U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.
Length = 2034
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -2
Query: 161 VTKLQQKGGPSCSNFPWSFVGTSECMLRV 75
++KL++ P+ N FVG + C++RV
Sbjct: 1359 ISKLKKGKPPAAINTVVDFVGPTRCLVRV 1387
>U37548-4|AAA79200.2| 373|Caenorhabditis elegans Hypothetical
protein C54D2.1 protein.
Length = 373
Score = 24.6 bits (51), Expect = 9.6
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -3
Query: 223 SVCTHNLCQCHVGKIFNSVSALP 155
S C +N+C C G+I + +P
Sbjct: 175 SFCVNNVCVCREGEIIENRQCVP 197
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 24.6 bits (51), Expect = 9.6
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = -3
Query: 223 SVCTHNLCQCHVGKIFN-SVSALPSSNKRVAHPARTFHGALSAPQNVCYALSSII 62
S C N CQC +G + + V L + K P G L P+++C S I
Sbjct: 701 STCMDNNCQCGIGFVASMDVCVLRKTGK----PNFLTPGYLCNPEDICTGQSVCI 751
>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical
protein F48E3.8b protein.
Length = 1299
Score = 24.6 bits (51), Expect = 9.6
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = -3
Query: 223 SVCTHNLCQCHVGKIFN-SVSALPSSNKRVAHPARTFHGALSAPQNVCYALSSII 62
S C N CQC +G + + V L + K P G L P+++C S I
Sbjct: 701 STCMDNNCQCGIGFVASMDVCVLRKTGK----PNFLTPGYLCNPEDICTGQSVCI 751
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,676,084
Number of Sequences: 27780
Number of extensions: 101107
Number of successful extensions: 233
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 12,740,198
effective HSP length: 54
effective length of database: 11,240,078
effective search space used: 224801560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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