Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_E16
         (245 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    24   3.2  
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce...    23   4.3  
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    23   5.6  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    23   5.6  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    23   5.6  
SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual          23   7.4  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    22   9.8  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    22   9.8  
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo...    22   9.8  

>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 244 ICLVYHHPFFFASFVGQFVVKSLFFVSNKARN 149
           +C++  HP F   F       +L+FV + ARN
Sbjct: 151 LCILSKHPGFIKLFYTFQDAHNLYFVLSLARN 182


>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 170

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 235 VYHHPFFFASFVGQFVVKSLFFVSNKARNSF*YLTIVFILPF 110
           VY     FAS V  FV  +L+   + ARN   ++T +  +PF
Sbjct: 25  VYFAGIMFASAVWVFVDAALYSAFDYARNL--HITFIDWIPF 64


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 208 SFVGQFVVKSLFFVSNKARNSF*YLTIVFILPFNRFKS 95
           SF     VKS+F V N++ N + +L    +  F  FKS
Sbjct: 72  SFSFYLCVKSIFHVHNESVNIWTHLFGAIVFLFFIFKS 109


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 50  CTTFRFKSQNNITPTGFKSI 109
           CTT+R   +NN+   G + I
Sbjct: 112 CTTYRLFDENNLLRQGLQKI 131


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 139 YLTIVFILPFNRFKSGRSNIIL 74
           Y+ + F    NRF +G+S ++L
Sbjct: 77  YVEVTFANADNRFPTGKSEVVL 98


>SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 144 NEFRALLDTKNRDFTTN*PTKLA 212
           N+FR L  +KN+    N PT L+
Sbjct: 268 NDFRFLFSSKNKYTLQNDPTTLS 290


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1297

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 194  LTNKTSKKKWMMVNKTN 244
            L+N  SKKKW +V   N
Sbjct: 1029 LSNDFSKKKWKVVASKN 1045


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 193 FVVKSLFFVSNKARNSF*YLTIVFIL 116
           F+V S+F  +N  RN    LT+ F+L
Sbjct: 441 FIVSSIFDNANFDRNLIVDLTLSFVL 466


>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 127 RWSSIKMNFELYWTQKIGI 183
           R+++++ N   YW QKI I
Sbjct: 173 RYANVQSNLIKYWLQKIFI 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 876,329
Number of Sequences: 5004
Number of extensions: 13448
Number of successful extensions: 29
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)