Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_E16
         (245 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical ...    27   1.8  
U80445-5|AAB37796.1|  185|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AC084196-7|AAK29949.2|  284|Caenorhabditis elegans Hypothetical ...    26   4.1  
U40948-4|AAA81730.2|  517|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AY849796-1|AAW34234.1|  517|Caenorhabditis elegans acetylcholine...    25   9.4  
AC024817-41|AAY86306.1|  152|Caenorhabditis elegans Hypothetical...    25   9.4  

>AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical
            protein Y80D3A.8 protein.
          Length = 1293

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 127  RWSSIKMNFELYW 165
            RW+ I+ NF+LYW
Sbjct: 1237 RWNGIQKNFQLYW 1249


>U80445-5|AAB37796.1|  185|Caenorhabditis elegans Hypothetical
           protein C50F2.4 protein.
          Length = 185

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 21  FCSLYTISYCAQHFDLNHRII 83
           FC+L TIS   + +D+N R+I
Sbjct: 119 FCNLETISSTCKRYDVNLRVI 139


>AC084196-7|AAK29949.2|  284|Caenorhabditis elegans Hypothetical
           protein Y55D5A.6 protein.
          Length = 284

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 53  CTVRNCVQTTKHLE 12
           C VR CV+ T+HLE
Sbjct: 168 CAVRTCVKKTEHLE 181


>U40948-4|AAA81730.2|  517|Caenorhabditis elegans Hypothetical
           protein F55D10.5 protein.
          Length = 517

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 75  CDLNRNVVHSKKLCTNYKTFRKPS 4
           C  ++ ++  +KL  NYK+FR PS
Sbjct: 63  CTSDKTII--EKLLNNYKSFRTPS 84


>AY849796-1|AAW34234.1|  517|Caenorhabditis elegans
           acetylcholine-gated chloride channelsubunit ACC-3
           protein.
          Length = 517

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 75  CDLNRNVVHSKKLCTNYKTFRKPS 4
           C  ++ ++  +KL  NYK+FR PS
Sbjct: 63  CTSDKTII--EKLLNNYKSFRTPS 84


>AC024817-41|AAY86306.1|  152|Caenorhabditis elegans Hypothetical
           protein Y54G2A.50 protein.
          Length = 152

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -2

Query: 184 KSLFFVSNKARNSF*YLTIVFILPF-NRFKSGR 89
           K   + SNK +NS     IVFI  F  RF  GR
Sbjct: 97  KKRAWCSNKTKNSIKQCFIVFIFGFERRFGDGR 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,850,824
Number of Sequences: 27780
Number of extensions: 74187
Number of successful extensions: 183
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 12,740,198
effective HSP length: 61
effective length of database: 11,045,618
effective search space used: 220912360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)