Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_E15
         (314 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    59   2e-10
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    27   0.51 
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   3.6  
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    24   4.7  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    24   4.7  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    24   4.7  
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    24   6.3  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    23   8.3  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 58.8 bits (136), Expect = 2e-10
 Identities = 24/37 (64%), Positives = 31/37 (83%)
 Frame = +2

Query: 203 TLAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRL 313
           +  IGQDIQP RDLSRFV+WP+YIR+QR++ +L  RL
Sbjct: 33  SFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRL 69


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 27.5 bits (58), Expect = 0.51
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 166 KIVNPLFEKRTLNFSYWPGHP 228
           KI  P+ +   +NF Y PGHP
Sbjct: 512 KISPPILQMSDVNFEYVPGHP 532


>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 202 NFSYWPGHPANQRSIP 249
           +F +WP   A+Q+SIP
Sbjct: 73  SFPWWPARVASQKSIP 88


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 300 NTAF*RWMRIYFGHRTKRDRSLVGWMSW 217
           N  F R +R+YF    + DRSL  +  W
Sbjct: 171 NANFLRQLRVYFECNYQLDRSLRPYRQW 198


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 202 NFSYWPGHPANQRSIPFRAMAEIY 273
           + SYW  HP    S PF    E++
Sbjct: 303 SLSYWQVHPFTLASAPFDDFIELF 326


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 202  NFSYWPGHPANQRSIPF 252
            N+S+W GH   ++ IP+
Sbjct: 1674 NYSWWDGHWFGRKGIPY 1690


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 13  SFGVRNRSRIYSWPLD 60
           SF + N+ R+Y+W L+
Sbjct: 291 SFAIDNKGRVYAWGLN 306


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 265 EIYSHPASKGCVTASS 312
           E++SHP   GC + SS
Sbjct: 251 EVFSHPFLMGCTSLSS 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,182,429
Number of Sequences: 5004
Number of extensions: 19629
Number of successful extensions: 38
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)