Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_E15
         (314 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    63   5e-11
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    63   5e-11
AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    63   5e-11
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...    63   5e-11

>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 62.9 bits (146), Expect = 5e-11
 Identities = 25/34 (73%), Positives = 32/34 (94%)
 Frame = +2

Query: 212 IGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRL 313
           IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RL
Sbjct: 145 IGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRL 178



 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 130 PLHLW*RIVEPNKIVNPLFEKRTLNFS 210
           P H+  +     ++ NPLFEKR  NF+
Sbjct: 118 PAHIRAQTQVQKEVKNPLFEKRARNFN 144


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 62.9 bits (146), Expect = 5e-11
 Identities = 25/34 (73%), Positives = 32/34 (94%)
 Frame = +2

Query: 212 IGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRL 313
           IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RL
Sbjct: 145 IGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRL 178



 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 130 PLHLW*RIVEPNKIVNPLFEKRTLNFS 210
           P H+  +     ++ NPLFEKR  NF+
Sbjct: 118 PAHIRAQTQVQKEVKNPLFEKRARNFN 144


>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score = 62.9 bits (146), Expect = 5e-11
 Identities = 25/34 (73%), Positives = 32/34 (94%)
 Frame = +2

Query: 212 IGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRL 313
           IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RL
Sbjct: 42  IGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRL 75



 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 130 PLHLW*RIVEPNKIVNPLFEKRTLNFS 210
           P H+  +     ++ NPLFEKR  NF+
Sbjct: 15  PAHIRAQTQVQKEVKNPLFEKRARNFN 41


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score = 62.9 bits (146), Expect = 5e-11
 Identities = 25/34 (73%), Positives = 32/34 (94%)
 Frame = +2

Query: 212 IGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRL 313
           IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RL
Sbjct: 42  IGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRL 75



 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 130 PLHLW*RIVEPNKIVNPLFEKRTLNFS 210
           P H+  +     ++ NPLFEKR  NF+
Sbjct: 15  PAHIRAQTQVQKEVKNPLFEKRARNFN 41


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,445,964
Number of Sequences: 27780
Number of extensions: 106457
Number of successful extensions: 179
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)