Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_E14
         (300 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   1.8  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   2.4  
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    25   3.1  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    24   5.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    24   5.5  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    23   7.3  

>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -2

Query: 263 TTIRRGFFHRFLFIFWI-PSNLSHFSSFICF 174
           T+ R G F + L  FWI  SNL   S F+ F
Sbjct: 442 TSNRAGMFFKGLLTFWILYSNLVPISLFVTF 472


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 93  NPRPQNDSLNTTAPLRQSQSIIYT 164
           NP  Q+   NTT   R + SIIYT
Sbjct: 301 NPMNQSLDCNTTPHRRNASSIIYT 324


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 120 NTTAPLRQSQSIIYT*PKKTN 182
           NTT  +R+ QS++YT    TN
Sbjct: 192 NTTVVIRRDQSVVYTGDVGTN 212


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 233 FLFIFWIPSNLSHFSSFICFFRLGINY*LRLSQWRSCI 120
           + F+ ++   L H S F CF  L I   ++L QW+  +
Sbjct: 729 YSFLSFLQRPLGHLSLFSCF--LQILLLIQLKQWQPSV 764


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 266  TTTIRRGFFHRFLFIFWIPSNLSHFSSFIC 177
            T T+    F  F F+ W+ + L+    F C
Sbjct: 4033 THTLPHNRFRLFFFLSWLHATLAEIYCFTC 4062


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 57  KNPISLDPTRGSNPRPQNDSLNTTAPL 137
           + P S + T G+NP   N+   T+AP+
Sbjct: 243 EQPSSKNNTSGANPPSSNNQEVTSAPI 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,099,920
Number of Sequences: 5004
Number of extensions: 17886
Number of successful extensions: 50
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)