Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_E14
         (300 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0206 - 21580240-21580467,21580544-21580591,21581533-215823...    27   2.7  
12_02_1053 + 25704123-25704313,25704378-25704812,25705760-257059...    26   4.7  

>09_06_0206 -
          21580240-21580467,21580544-21580591,21581533-21582321,
          21582779-21582979
          Length = 421

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +1

Query: 34 DSGMILSRKTQYHLTRPGDR 93
          D GM   RK  YH  RPGDR
Sbjct: 19 DEGMEGYRKGGYHAARPGDR 38


>12_02_1053 +
           25704123-25704313,25704378-25704812,25705760-25705913,
           25706143-25706229
          Length = 288

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 33  RLRDDTE*KNPISLDPTRGSNPRPQNDSL 119
           R RDDTE + PISL   +   P+    SL
Sbjct: 138 RSRDDTEVRAPISLSAAQKQKPKRGGGSL 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,921,442
Number of Sequences: 37544
Number of extensions: 108599
Number of successful extensions: 195
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)