Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_E14
         (300 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74042-14|CAE11313.1|  311|Caenorhabditis elegans Hypothetical p...    27   2.5  
AY669390-1|AAU05395.1|  211|Caenorhabditis elegans aromatic L-am...    27   3.3  
AF047651-9|AAC02720.2|  509|Caenorhabditis elegans Hypothetical ...    27   3.3  
AF077542-4|AAU20829.1|  315|Caenorhabditis elegans Serpentine re...    26   4.4  
AF024498-11|AAF39802.1|  310|Caenorhabditis elegans Serpentine r...    26   5.8  

>Z74042-14|CAE11313.1|  311|Caenorhabditis elegans Hypothetical
           protein T11F9.18 protein.
          Length = 311

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 227 FIFWIPSNLSHFSSFIC 177
           FI WIPSN+S+  + +C
Sbjct: 264 FIIWIPSNMSYILTAMC 280


>AY669390-1|AAU05395.1|  211|Caenorhabditis elegans aromatic L-amino
           acid decarboxylase-like protein protein.
          Length = 211

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 264 YYHSPRIFS*ISIYFLD 214
           YYH PR+F    +YF D
Sbjct: 26  YYHDPRVFKNFVMYFTD 42


>AF047651-9|AAC02720.2|  509|Caenorhabditis elegans Hypothetical
           protein C05D2.3 protein.
          Length = 509

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 264 YYHSPRIFS*ISIYFLD 214
           YYH PR+F    +YF D
Sbjct: 208 YYHDPRVFKNFVMYFTD 224


>AF077542-4|AAU20829.1|  315|Caenorhabditis elegans Serpentine
           receptor, class z protein63 protein.
          Length = 315

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 245 FFHRFLFIFWIPSNLSHFSSFICFFRL 165
           +F++ + I +IPS L+H   FI +F L
Sbjct: 52  YFYKMVKITFIPSLLTHIIGFIDYFLL 78


>AF024498-11|AAF39802.1|  310|Caenorhabditis elegans Serpentine
           receptor, class x protein108 protein.
          Length = 310

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 278 YRDGTTTIRRGFFHRFLFIFWIPSNLSHFSSFICFFRLGINY 153
           Y  G TT      +RFL +++ P N   +S+ I    +GI++
Sbjct: 91  YLQGPTTQLMITINRFLVVWFSPVNTPRYSTRITVAAMGISW 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,001,965
Number of Sequences: 27780
Number of extensions: 97019
Number of successful extensions: 208
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)